BO30547.complete Sequence
1774 bp assembled on 2011-11-09
GenBank Submission: KX798871
> BO30547.complete
GAAGTTATCAGTCGACATGCCCAGCCAAATGAGCTTATCGGAAGGTCTCC
AGGCACCAATTGCTGGAGTGCAGCCTCATCTGCAGCCATGGGAGGCACAT
GCGTGGTCCCCGGATCGTCTGGGCTCTATGTACTCCGACTGGGCCATGTT
CTTTTTCACCCAACAGCGGTACGCAAACGGACTTAGGTATTTCAACAGCG
CTCTGGATCTGAATCCGTTCAATGAAAGAGCTCTGATGCGGCGTAGTCAG
CTGAAAAGATCGATGGGCCTAGCCTCCGAGGCTCTGAAGGATTGCTCCCG
AGCAGAGGATCTGTTGATGAGCCGAAAGCCACCAGTAACCAATCCCAATG
TCAGTCTGGAAGTCTGCGATGCTCTGTACGAGTCCAATCGCTTGGAAGAT
TCCAAAATAAATCTGCATTGTCATTTAAAGCGATTTAGCTCCGGCCAAAG
AGGTCCTGTTCTCGACCGTCTCAATGTGTTAAATGAGAACTTTCATGACA
CATTATCAGATGATACCACCATGTCTGTGCAGCGCCTGATCAATCGCATG
ATGGCTAGTTTGGCTAAGGAGCCCAAGGATATTAAGGATACTTGCGACGT
GGTTAGCATAATGGAAAACGAGGAAACCCATTTGTCCCCACTGGAAATGG
CTAGGCGAAAAAGGCATTTTAAGATATACAACCAGACGTATCTGAACAAA
TGCTGGGTGGATGTGGCCTTTCTGAAGACACTGCGAGATGATCCTAATGT
GCTGCCCAAGCATTGCAAAAAGTCATCCGAGTATTTGGGCAAACTGATGG
CTAGCAATTATAAAGCGGAACGCACTCTTACGAAAACGCTGCATACCCGA
AGTCCCATGTACGCCTTACATCAACAGAAATATCCCAACGAGGCATTTTA
TAATAAGCACCGGGAGGAAAACCTATATCGCATTCAGTACCAGACGAGGC
GGAATATGTTCAAGATTCTGCGCAGCATTCGATTGCTAATTCGAGTTGGA
GAACTCAATAAACTAACCACATTTATTGAGGAAGTCATGGGCGACTATGT
CACCATCAAGACGAATCGCGTAATGCCGTGGAAATTTGAATTCACTAATG
AGGTCTACAACTACTTGGGTTTAGCTCGCATTAATGAATACAAAATTCCC
AGCAATATGACTGTCTTGCAGGGCAAACAACGTCTGCTAACACTTTTTAG
ACTTCCCCTCAGTAATAGTCTGGACATGAAAAAATCAAAGACAAAACGAA
CGAGTGCTCTGAATATAACCAGATCGGCTACCACCGATCCCAAAGCGGAG
CATTTTAAGAAACAAGTCGTCCGACTGGAAAATCGTATGCGGTTTGCCGA
GTATCACATTGAACGGGCCTATCTACTGCACGAATTGGCCCAAGAGCATC
TGAATTGTAACTCATTTGATGGGGCCTGCTCCATGGCACGAATGGCCCTG
GAGGAGGCCATCAAATGCAAGAGTGTTATATGGAGCTTTCTGAGTCTCAT
GGTTATATGCAAGGCCCACGCGATTCTCGGCAAGATCGAACGGGAAAAGG
AGATTCTGGCCGAAGCCTTCGAGCTGGCCAAGAAAATGAAGAACCTTGAC
CTGTGCTTATTCATAGATATATGCATTAAAGTTAATGCGGAGGAGATGGA
AATGAAGCGCATGGTTACCACAGATTTGACTGCTAAGAGACAAAAGTTTG
GCTCAAAAATGTTCCAAAGCAACGATCAGGTGAATGAGGATCGCAACCAA
ATTACCGCAAGCTTTCTAGACCAT
BO30547.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:46:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| wa-cup-RB | 1743 | CG10113-PB | 1..1740 | 17..1756 | 8700 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:46:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| wa-cup-RB | 1878 | CG10113-RB | 91..1830 | 17..1756 | 8700 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:46:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 7422707..7423009 | 1454..1756 | 1515 | 100 | Plus |
| 3R | 32079331 | 3R | 7422155..7422454 | 1010..1309 | 1500 | 100 | Plus |
| 3R | 32079331 | 3R | 7420855..7421146 | 17..308 | 1460 | 100 | Plus |
| 3R | 32079331 | 3R | 7421633..7421844 | 621..832 | 1060 | 100 | Plus |
| 3R | 32079331 | 3R | 7421917..7422094 | 832..1009 | 890 | 100 | Plus |
| 3R | 32079331 | 3R | 7421200..7421374 | 308..482 | 860 | 99.4 | Plus |
| 3R | 32079331 | 3R | 7422505..7422657 | 1302..1454 | 750 | 99.3 | Plus |
| 3R | 32079331 | 3R | 7421432..7421581 | 478..627 | 735 | 99.3 | Plus |
Blast to na_te.dros performed on 2014-11-28 05:46:06 has no hits.
BO30547.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-09 10:40:40 Download gff for
BO30547.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| wa-cup-RB | 91..1830 | 17..1758 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:27:58 Download gff for
BO30547.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| wa-cup-RB | 91..1830 | 17..1758 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:17:55 Download gff for
BO30547.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| wa-cup-RB | 91..1830 | 17..1758 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:17:55 Download gff for
BO30547.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 7422512..7422657 | 1309..1454 | 100 | -> | Plus |
| 3R | 7422708..7423009 | 1455..1758 | 99 | | Plus |
| 3R | 7420855..7421146 | 17..308 | 100 | -> | Plus |
| 3R | 7421201..7421370 | 309..478 | 100 | -> | Plus |
| 3R | 7421433..7421576 | 479..622 | 100 | -> | Plus |
| 3R | 7421635..7421844 | 623..832 | 100 | -> | Plus |
| 3R | 7421918..7422094 | 833..1009 | 100 | -> | Plus |
| 3R | 7422155..7422453 | 1010..1308 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:27:58 Download gff for
BO30547.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 3248234..3248379 | 1309..1454 | 100 | -> | Plus |
| arm_3R | 3247640..3247816 | 833..1009 | 100 | -> | Plus |
| arm_3R | 3247357..3247566 | 623..832 | 100 | -> | Plus |
| arm_3R | 3246577..3246868 | 17..308 | 100 | -> | Plus |
| arm_3R | 3246923..3247092 | 309..478 | 100 | -> | Plus |
| arm_3R | 3247155..3247298 | 479..622 | 100 | -> | Plus |
| arm_3R | 3247877..3248175 | 1010..1308 | 100 | -> | Plus |
| arm_3R | 3248430..3248731 | 1455..1758 | 99 | | Plus |
BO30547.pep Sequence
Translation from 16 to 1774
> BO30547.pep
MPSQMSLSEGLQAPIAGVQPHLQPWEAHAWSPDRLGSMYSDWAMFFFTQQ
RYANGLRYFNSALDLNPFNERALMRRSQLKRSMGLASEALKDCSRAEDLL
MSRKPPVTNPNVSLEVCDALYESNRLEDSKINLHCHLKRFSSGQRGPVLD
RLNVLNENFHDTLSDDTTMSVQRLINRMMASLAKEPKDIKDTCDVVSIME
NEETHLSPLEMARRKRHFKIYNQTYLNKCWVDVAFLKTLRDDPNVLPKHC
KKSSEYLGKLMASNYKAERTLTKTLHTRSPMYALHQQKYPNEAFYNKHRE
ENLYRIQYQTRRNMFKILRSIRLLIRVGELNKLTTFIEEVMGDYVTIKTN
RVMPWKFEFTNEVYNYLGLARINEYKIPSNMTVLQGKQRLLTLFRLPLSN
SLDMKKSKTKRTSALNITRSATTDPKAEHFKKQVVRLENRMRFAEYHIER
AYLLHELAQEHLNCNSFDGACSMARMALEEAIKCKSVIWSFLSLMVICKA
HAILGKIEREKEILAEAFELAKKMKNLDLCLFIDICIKVNAEEMEMKRMV
TTDLTAKRQKFGSKMFQSNDQVNEDRNQITASFLDH
BO30547.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:37:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| wa-cup-PB | 580 | CG10113-PB | 1..580 | 1..580 | 3016 | 100 | Plus |
| CG7634-PA | 579 | CG7634-PA | 16..554 | 17..548 | 1024 | 41.7 | Plus |
| CG15128-PA | 580 | CG15128-PA | 5..549 | 11..548 | 884 | 36.8 | Plus |
| r-cup-PA | 594 | CG10998-PA | 8..552 | 13..549 | 842 | 35.8 | Plus |
| p-cup-PA | 538 | CG12993-PA | 61..518 | 117..560 | 573 | 32 | Plus |
