BO30549.complete Sequence
2890 bp assembled on 2011-11-09
GenBank Submission: KX798590
> BO30549.complete
GAAGTTATCAGTCGACATGGAACCAGATCCCAATGGGATAAAAATAGAGC
CCTCACTTGATCAGCAGCAGTACGCCACCCATGTGCTGGCCATCAATGGC
TCCAATGCCCGCCTGCTCATCGAGCATCCCTCAGCTTTGTTGGTACCACT
CTCCTCGCATCACCAGCTGCAATTGCAACAGCAGCAACAACAGCAGCAGC
ACGTACAGCAGCAACATCAACAACAGCAGCAGCAGCATCAGCAACAACAG
CAACAGTTCCAGCAGCAACATCTTCACCAGCAGCAACAGGATCAACTGCA
GTTCCAGCAACAGCATCTCCAGCTTTATGCACCACTGAAGCAACAGCAAT
TGCAGCAGCAGCAATCGCAGCAGCCACCCACTCCATTGGGACCCACCAGC
AGTGCCAGTTCCGCATCCATAACAGGTGCCTCCACCACTGGCCACCAGCA
GAGGTGGAACGAGAGCCCCGAGGCACGCCAGCGCCGTCTGGCCAGAAATG
CTGAAAGGATGCGGGAACGCCGGCAGCGCGAGAGCGAGGAGGAGTATCGC
AAGCGACTACTCCGGAATGCAGAAGCCAATCGCCAGAGACGCCAGAATGA
ATCCGACATAGAGCGGGCCATGCGGCTAGTGAGGAATGCGGCCAGGCAAC
GGCTACGCCGGGCCATGGAGTCGCCGGACCAGAGGGCCAAACGGCTGGCC
AAATTGGCCGAAAGGATGCGCATGTATCGCGCCAGCGAGACGAACGATCA
GCGAAAGCTCCGGCTGGCAGAAATGGCGGCAAGGGCGCGCCAAAGGATCG
CCAATGAGTCACCGGAGGAGCGGAAGGAAAGACTGAGAAAGCTGAACGAT
TATGCCAAAAAGGCGACCACCACAGCGACGACGACGACAACGGACGAGGC
AGGCACCCCGCAGCCCGCGGAGGATCAGCAGCATCTGGTGACAGCAGCCG
CCTATCAGCAACACCAGGCCCTGGCCGGAGTGGAGTATATGGGACAGGGC
ATGTTTCTGGCGCCCGGCTCCCTGCGTCCACCCATGCAACTGAAGCAGGA
GCCACAGACGCCGCAGCAGCAGCAGATTACACAGCAGCAGCTGCAGCAGC
AGCATCAGCGATACACCATCACCGGGCAGCAGCAGCAACAGGTTACGGCT
GCTCTACTCGAGGGCACCGAGCCGGGCAGCATCTTTGTGCAGCAGATCTA
TGGCGATGAGGGTGGCAAGGGCACCGCAAAGCTGCTCCAGGCCCATGTGC
CGCACTTCAGCATTGCCGGTGGCCAGCTGGAACTCTACCCGCACAAATAT
GCTGCCAAGAAGCAGGAACTTCAGTCGGACAACGATGCTACGGTATCAGC
GGGCGGCAATGATAACAGCGGGTCTGTTAGCCTCGGCCACAACGAGACCA
AGGTGATCGTGACGACGGCCAGCGGGGAACAGAAGCTGCTTAAGGCGACG
CCCGGCCAGGCGCAGCAGCTGTATAATCAATTCCCCTACCTGGCCACCTT
CCCTAACACCACCAGCAGCGGCAACAGCACCACCAGTACCACCAATGTCG
GACACGTGGGCGTGGTGACGGCGGGTACAACAACGGGCGCCGGCGGTACA
ACCACCACCGCCTACTATCCAATGTACCACAATGGCTTCCAGATTGGCAT
CGGGCCGAATGCCGTGCCGCCGCCGTTTACGCCCGTCAACTTTGCCAACG
CCAGTGGTGGCAATAGTCCCGGCCAGTATAACATACTGGCGGCGAATCCA
ACGCTAACGGTCACTGGATTGGGACAGCAGGAGCAACAACAGACAGGCGC
GTCGTCGGCGGCGGCGCCACAAATTGTGACCACACCTGTGGGCAGGGGCA
GGCCGCGAAAGAATCCGTTGCCCAGCGAGGAGCAGCTAAAGGTGAACAGC
TTGCTGGAGCAGGAGCTCAATCAGATGCTGTCCGCACCGCAGCTGGCCAC
CAGTACGCCGCGTCGCGGCAGGCCACTGTCGCAGGCATCCCAGCAACATC
ATCAGGAGCTCAGCCAGATTCATGTACATTCCACGGCCGATGGCGACAGT
CGAACGCCAGTGTTGACGCCGCGACGCAGCGGTGCTAACAAATACGAGAC
GGAGGAGGAGAAGCGAATACGTTTGGACAAGATGGCCGCACACCAGCGAG
CGGTGCGTGCCAATGAGACGCCCGAGCAGCGGGCCACGCGTCTACAGAAG
CTGAGCGAACGGGCACGGCTGAAGCGGGCCCAGATCCGAGCCACCGAGAA
TACGGACGAGCGCAAGGAGCGACTGTCCAAGCAGGCGGAATATGCGCGAA
TGCGACGCATGCGCAGCCACACGCCGCGCAGCAGCAGCGCCACCAGCACC
GAGTTCCGTGCCAAAACCGAGGAAGAAGATGAGTGCCAGGACGATGACAC
CAGTGCCGAGCATCATATGTACGAAAGTGAAGCCGTTTCGGTCACTGGCA
CGGGCAGTGATGGTGGCTTCGTTTCGGTGGTGAAGGCCGACAACGACGAT
TCACCATTGGGCGGTGGCGATGGCTCCAACGATCACGAACAGTTGCCGGC
GCTGCAATTGCAGCAGCATGAGCTTCAGCAGATTGCCGGCAGCCTGCAGC
AGCAACATTTGGTGCCGCATCCGCATCACGAGGCGATTGTGTTGAACCAG
CAGCACCGCCTGGTGACCATCAGTCAGCACCAGCAGCAGCAGCTCCATCA
GCAGCAGCATCCTGGCTTCAGCAAACTGCAGACGGTCAAGGATTATGCAA
ATGCAGCCGGCGGTGGAGGCGGAGGAGGAGCTGCTGGTTCTGGCGGCGGC
AGTGGAACGGGAGCACCCGAAAACAATGACATGCTAAAGATACTCGAGCC
AATCATTGTGATGAAGACCAAAGCAAGCTTTCTAGACCAT
BO30549.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:48:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14442-RB | 2859 | CG14442-PB | 1..2856 | 17..2872 | 14055 | 99.5 | Plus |
| CG14442-RE | 2877 | CG14442-PE | 1..2874 | 17..2872 | 13840 | 98.9 | Plus |
| CG14442-RC | 3027 | CG14442-PC | 1013..3024 | 861..2872 | 9835 | 99.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:48:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14442-RB | 4388 | CG14442-RB | 1046..3901 | 17..2872 | 14055 | 99.5 | Plus |
| CG14442-RE | 4412 | CG14442-RE | 1052..3925 | 17..2872 | 13840 | 98.9 | Plus |
| CG14442-RC | 4562 | CG14442-RC | 2064..4075 | 861..2872 | 9835 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:48:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 6689807..6691357 | 2872..1322 | 7590 | 99.3 | Minus |
| X | 23542271 | X | 6693110..6693956 | 863..17 | 4235 | 100 | Minus |
| X | 23542271 | X | 6692403..6692866 | 1324..861 | 2260 | 99.1 | Minus |
| 3L | 28110227 | 3L | 14027696..14027803 | 288..181 | 210 | 79.6 | Minus |
Blast to na_te.dros performed 2014-11-28 05:48:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6742..7194 | 157..608 | 454 | 60 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6887 | 210..377 | 363 | 68.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2434..2679 | 159..398 | 344 | 62.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6898 | 234..425 | 336 | 69.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2260..2534 | 180..451 | 286 | 60.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6713..6938 | 251..482 | 273 | 63.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2525 | 260..471 | 268 | 62.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2619..2835 | 161..377 | 247 | 62.1 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1059..1181 | 225..351 | 238 | 67.7 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1055..1147 | 272..364 | 195 | 67.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6729..6959 | 2532..2763 | 194 | 58.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2449 | 283..424 | 192 | 62.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6703..6886 | 2545..2724 | 190 | 59.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1518..1589 | 239..310 | 189 | 73.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6719..6893 | 2544..2711 | 182 | 61.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6877 | 299..451 | 178 | 61.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6760..6941 | 2523..2711 | 163 | 58.1 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3192..3342 | 180..347 | 144 | 60.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6734..6851 | 2594..2711 | 139 | 59.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6834..6873 | 1505..1544 | 128 | 80 | Plus |
BO30549.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-09 10:40:41 Download gff for
BO30549.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14442-RB | 1046..3901 | 17..2874 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:28:10 Download gff for
BO30549.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14442-RB | 1046..3901 | 17..2874 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:18:40 Download gff for
BO30549.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14442-RB | 1046..3901 | 17..2874 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:18:40 Download gff for
BO30549.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 6689804..6691354 | 1325..2874 | 99 | <- | Minus |
| X | 6692403..6692864 | 863..1324 | 99 | <- | Minus |
| X | 6693111..6693956 | 17..862 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:28:10 Download gff for
BO30549.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 6583837..6585387 | 1325..2874 | 99 | <- | Minus |
| arm_X | 6586436..6586897 | 863..1324 | 99 | <- | Minus |
| arm_X | 6587144..6587989 | 17..862 | 100 | | Minus |
BO30549.pep Sequence
Translation from 16 to 2890
> BO30549.pep
MEPDPNGIKIEPSLDQQQYATHVLAINGSNARLLIEHPSALLVPLSSHHQ
LQLQQQQQQQQHVQQQHQQQQQQHQQQQQQFQQQHLHQQQQDQLQFQQQH
LQLYAPLKQQQLQQQQSQQPPTPLGPTSSASSASITGASTTGHQQRWNES
PEARQRRLARNAERMRERRQRESEEEYRKRLLRNAEANRQRRQNESDIER
AMRLVRNAARQRLRRAMESPDQRAKRLAKLAERMRMYRASETNDQRKLRL
AEMAARARQRIANESPEERKERLRKLNDYAKKATTTATTTTTDEAGTPQP
AEDQQHLVTAAAYQQHQALAGVEYMGQGMFLAPGSLRPPMQLKQEPQTPQ
QQQITQQQLQQQHQRYTITGQQQQQVTAALLEGTEPGSIFVQQIYGDEGG
KGTAKLLQAHVPHFSIAGGQLELYPHKYAAKKQELQSDNDATVSAGGNDN
SGSVSLGHNETKVIVTTASGEQKLLKATPGQAQQLYNQFPYLATFPNTTS
SGNSTTSTTNVGHVGVVTAGTTTGAGGTTTTAYYPMYHNGFQIGIGPNAV
PPPFTPVNFANASGGNSPGQYNILAANPTLTVTGLGQQEQQQTGASSAAA
PQIVTTPVGRGRPRKNPLPSEEQLKVNSLLEQELNQMLSAPQLATSTPRR
GRPLSQASQQHHQELSQIHVHSTADGDSRTPVLTPRRSGANKYETEEEKR
IRLDKMAAHQRAVRANETPEQRATRLQKLSERARLKRAQIRATENTDERK
ERLSKQAEYARMRRMRSHTPRSSSATSTEFRAKTEEEDECQDDDTSAEHH
MYESEAVSVTGTGSDGGFVSVVKADNDDSPLGGGDGSNDHEQLPALQLQQ
HELQQIAGSLQQQHLVPHPHHEAIVLNQQHRLVTISQHQQQQLHQQQHPG
FSKLQTVKDYANAAGGGGGGGAAGSGGGSGTGAPENNDMLKILEPIIVMK
TKASFLDH
BO30549.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:37:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14442-PB | 952 | CG14442-PB | 1..952 | 1..952 | 4889 | 100 | Plus |
| CG14442-PE | 958 | CG14442-PE | 1..958 | 1..952 | 4872 | 99.4 | Plus |
| CG14442-PC | 1008 | CG14442-PC | 1..1008 | 1..952 | 4671 | 91.6 | Plus |
| CG14442-PA | 1034 | CG14442-PA | 1..1034 | 1..952 | 4487 | 86.9 | Plus |
| CG14442-PD | 529 | CG14442-PD | 1..518 | 1..436 | 1991 | 80.3 | Plus |
