BO30550.complete Sequence
865 bp assembled on 2011-09-30
GenBank Submission: KX795261
> BO30550.complete
GAAGTTATCAGTCGACATGTACTGGATTTTGCTGTTGACGTCTCTCTTGC
CATGGCATCCCCATGCAACTGCCCAATTTCTGGAACCCGATTGTGGATAT
ATGTCACCGGAGGCACTCCAAAATGAGGAGCACCAGGCGCACATATCCGA
GAGTCCTTGGATGGCTTACTTGCACAAATCTGGCGAGCTTGTATGTGGCG
GAACTCTCGTAAATCATCGATTCATCCTGACAGCAGCACATTGCATACGA
GAGGATGAAAACTTGACTGTGCGACTGGGCGAGTTCAACAGCTTAACTAG
TATCGACTGCAACGGCTCCGATTGCCTGCCACCTTCCGAGGATTTTGAAA
TAGATGTGGCCTTCAGGCATGGGGGCTATTCCAGAACCAATAGGATCCAC
GACATTGGACTTCTCCGGCTGGCCAAGTCGGTGGAGTATAAAGTTCACAT
TAAGCCCATTTGCCTGATCACAAATACGACCCTTCAGCCGAAGATTGAAA
GACTCCACAGGCTGGTAGCCACTGGCTGGGGCCGCAGCCCATCGGAAGCT
GCAAACCACATCCTAAAGTCCATTCGCGTAACCAGAGTGAATTGGGGTGT
GTGCAGCAAAACATACTGGGTTGACCGTCGTAGGGATCAGATCTGCGTGA
GTCACGAGTCCGGAGTGTCGTGCAGCGGCGACTCCGGCGGACCCATGGGC
CAAGCCATTCGGCTCGACGGTCGAGTGCTCTTCGTTCAGGTCGGAATCGT
TAGCTATGGCAACGCTGAGTGCCTCAGTCCCAGTGTTTTCACAAACGTGA
TGGAACATATTGATTGGATAATGGCGGCGTTGAGCACAACTCACATTGCA
AGCTTTCTAGACCAT
BO30550.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:10:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30286-RB | 834 | CG30286-PB | 1..831 | 17..847 | 4155 | 100 | Plus |
| CG30286-RC | 459 | CG30286-PC | 1..427 | 17..443 | 2135 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:10:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30286-RB | 904 | CG30286-RB | 12..842 | 17..847 | 4155 | 100 | Plus |
| CG30286-RC | 967 | CG30286-RC | 12..438 | 17..443 | 2135 | 100 | Plus |
| CG30286-RC | 967 | CG30286-RC | 500..905 | 442..847 | 2030 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:09:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21535778..21536183 | 847..442 | 2030 | 100 | Minus |
| 2R | 25286936 | 2R | 21536582..21536784 | 219..17 | 1015 | 100 | Minus |
| 2R | 25286936 | 2R | 21536245..21536423 | 443..265 | 895 | 100 | Minus |
| 2R | 25286936 | 2R | 21536481..21536527 | 265..219 | 235 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:09:59 has no hits.
BO30550.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-30 10:53:12 Download gff for
BO30550.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30286-RB | 12..842 | 17..849 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 12:01:59 Download gff for
BO30550.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30286-RB | 12..842 | 17..849 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:12:19 Download gff for
BO30550.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30286-RB | 12..842 | 17..849 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:12:19 Download gff for
BO30550.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21535775..21536181 | 444..849 | 99 | <- | Minus |
| 2R | 21536245..21536423 | 265..443 | 100 | <- | Minus |
| 2R | 21536482..21536527 | 219..264 | 100 | <- | Minus |
| 2R | 21536583..21536784 | 17..218 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 12:01:59 Download gff for
BO30550.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17423280..17423686 | 444..849 | 99 | <- | Minus |
| arm_2R | 17423750..17423928 | 265..443 | 100 | <- | Minus |
| arm_2R | 17423987..17424032 | 219..264 | 100 | <- | Minus |
| arm_2R | 17424088..17424289 | 17..218 | 100 | | Minus |
BO30550.pep Sequence
Translation from 16 to 865
> BO30550.pep
MYWILLLTSLLPWHPHATAQFLEPDCGYMSPEALQNEEHQAHISESPWMA
YLHKSGELVCGGTLVNHRFILTAAHCIREDENLTVRLGEFNSLTSIDCNG
SDCLPPSEDFEIDVAFRHGGYSRTNRIHDIGLLRLAKSVEYKVHIKPICL
ITNTTLQPKIERLHRLVATGWGRSPSEAANHILKSIRVTRVNWGVCSKTY
WVDRRRDQICVSHESGVSCSGDSGGPMGQAIRLDGRVLFVQVGIVSYGNA
ECLSPSVFTNVMEHIDWIMAALSTTHIASFLDH
BO30550.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:26:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30286-PB | 277 | CG30286-PB | 1..277 | 1..277 | 1494 | 100 | Plus |
| CG30286-PC | 152 | CG30286-PC | 1..142 | 1..142 | 775 | 100 | Plus |
| CG30090-PA | 291 | CG30090-PA | 23..283 | 20..277 | 547 | 39.5 | Plus |
| CG30083-PB | 279 | CG30083-PB | 1..266 | 1..279 | 508 | 36.7 | Plus |
| CG30087-PA | 277 | CG30087-PA | 7..274 | 3..272 | 495 | 37.4 | Plus |
