BO30551.complete Sequence
1354 bp assembled on 2012-04-24
GenBank Submission: KX794191
> BO30551.complete
GAAGTTATCAGTCGACATGCGCCCGGAGTTCATAGCTGAACGGAAGCAAG
CCCTGCAAGAGTACATAAACGCCGTACTAATGAATCCCATATTGGCATCC
TCGCTGCCAGCCAAGCGCTTTGTGGATCCCGAGAGTTACTCGCAGTCCTT
TCACGACCATGCCGTGCAGAATGCTATGCTCTGCCTGCGCAACGACACTA
CGTGGTCGCTGGGTGGAAGTATGGGTGCCATAGGCTGGCGCCTCCGGAAG
CACTACTTTAAGGTCACTACAAAGCCGCCGGAGAAGAGCAGCAACAAGCA
ACTGGTTAAGAGCGGTTCACAGACCCATCAGAGCAAACATTTCGCCGCTG
GGAGCAGCAATGGCAGCGGTCACTCCATCGACGCCGGAACCTTGGATCCC
GGGTCAGAGGTGGTGGCTGAGTGGCTGGAGTACGGACCCGACAAGTTTAT
CGACGAAAAAGAAATCGGGGGCATAATGAAAAGCCTGATGGGCCTGCAGC
ATCCGCACATCGAGCCCGTTCTCCTGGCAGCCCACACCGAAAACGGTTGC
CTGGTCATAAGAAAATTCCACAAGCATGGTACTTTAAAGGATGTTTTGTG
CATGGCCGCGAATCCAAAGAATACATTTCTTAGCAAGTACGGCAATCCCA
AGGGGCGCACTGCGCTTTCAATGAAACAAGTGGCTACATATGGGAAGCAG
ATTCTAGAGGCCCTAATATTTTTGCACTCGAAGGGATACGCATATGGTCA
CCTACATTCCGGAAACATAGTGATAGTCGACGATTGTGTTAAGCTACTCG
ACATCGAGAACTTTTTGCTGGGCGTTCCAGCGTTTTACCGGCCATTTTTC
ATGCAGCACAGTAAAATCCATGCCATCGAGACCATTGATGTTTACTGTTT
TGGTCATGTCCTCTTCGAAATGGCCATGGGTTATCCTCTGCAGGAGTCTG
TCGTGCGCCAGATCACCGAATGTCCCGAAGCGCTGAAATGTCTTCTGGAG
AGCATTCTTTCCAAGGAAGCTTGCAAAGCTGGCCTGCCGACTCTGGAGCA
ATTGTTGGGTCACAGATTCTTCTTGCAATACGCTTCAACCGAGAGCGCCG
GCGCCGCTGCCAATGCTGAAAAGCCGTACTTTAAGCTATCATTGAACGCC
AAGGAGCTGCTTAAGCAGGCGGCTATCAAGAGCGAAAACCGCCTGCGGGA
CGAACAGAAGTCTGTGAAGAACCAAAAACGCATTGTGCGTGTCCAGGAAC
TGATGAGCTCCGAGGAGGAGAAGCGGAAGTCCAAGCAGAAAGCCGTTAGT
TACCCAAAACCCAAAGCCCGAACACTTCACGTAGTTGCAAGCTTTCTAGA
CCAT
BO30551.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:07:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8726-RC | 1323 | CG8726-PC | 1..1320 | 17..1336 | 6555 | 99.8 | Plus |
| CG8726-RB | 1941 | CG8726-PB | 248..1527 | 15..1294 | 6355 | 99.8 | Plus |
| CG8726-RA | 1692 | CG8726-PA | 1..1278 | 17..1294 | 6345 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:07:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8726-RC | 3470 | CG8726-RC | 548..1869 | 15..1336 | 6565 | 99.8 | Plus |
| CG8726-RB | 3336 | CG8726-RB | 513..1792 | 15..1294 | 6355 | 99.8 | Plus |
| CG8726-RA | 3371 | CG8726-RA | 548..1827 | 15..1294 | 6355 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:07:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7970774..7971183 | 564..155 | 2050 | 100 | Minus |
| 2R | 25286936 | 2R | 7969827..7970176 | 1336..987 | 1735 | 99.7 | Minus |
| 2R | 25286936 | 2R | 7970235..7970475 | 986..746 | 1175 | 99.2 | Minus |
| 2R | 25286936 | 2R | 7970530..7970713 | 748..565 | 920 | 100 | Minus |
| 2R | 25286936 | 2R | 7971244..7971384 | 155..15 | 705 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 05:07:38 has no hits.
BO30551.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-24 17:01:19 Download gff for
BO30551.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8726-RC | 596..1915 | 17..1338 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:29:34 Download gff for
BO30551.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8726-RC | 550..1869 | 17..1338 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:04:40 Download gff for
BO30551.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8726-RC | 550..1869 | 17..1338 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:04:40 Download gff for
BO30551.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7969825..7970176 | 987..1338 | 99 | <- | Minus |
| 2R | 7970235..7970474 | 747..986 | 99 | <- | Minus |
| 2R | 7970532..7970713 | 565..746 | 100 | <- | Minus |
| 2R | 7970774..7971182 | 156..564 | 100 | <- | Minus |
| 2R | 7971244..7971382 | 17..155 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:29:34 Download gff for
BO30551.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3858749..3858887 | 17..155 | 100 | | Minus |
| arm_2R | 3857330..3857681 | 987..1338 | 99 | <- | Minus |
| arm_2R | 3857740..3857979 | 747..986 | 99 | <- | Minus |
| arm_2R | 3858037..3858218 | 565..746 | 100 | <- | Minus |
| arm_2R | 3858279..3858687 | 156..564 | 100 | <- | Minus |
BO30551.pep Sequence
Translation from 16 to 1354
> BO30551.pep
MRPEFIAERKQALQEYINAVLMNPILASSLPAKRFVDPESYSQSFHDHAV
QNAMLCLRNDTTWSLGGSMGAIGWRLRKHYFKVTTKPPEKSSNKQLVKSG
SQTHQSKHFAAGSSNGSGHSIDAGTLDPGSEVVAEWLEYGPDKFIDEKEI
GGIMKSLMGLQHPHIEPVLLAAHTENGCLVIRKFHKHGTLKDVLCMAANP
KNTFLSKYGNPKGRTALSMKQVATYGKQILEALIFLHSKGYAYGHLHSGN
IVIVDDCVKLLDIENFLLGVPAFYRPFFMQHSKIHAIETIDVYCFGHVLF
EMAMGYPLQESVVRQITECPEALKCLLESILSKEACKAGLPTLEQLLGHR
FFLQYASTESAGAAANAEKPYFKLSLNAKELLKQAAIKSENRLRDEQKSV
KNQKRIVRVQELMSSEEEKRKSKQKAVSYPKPKARTLHVVASFLDH
BO30551.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:15:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8726-PC | 440 | CG8726-PC | 1..440 | 1..440 | 2285 | 100 | Plus |
| CG8726-PB | 646 | CG8726-PB | 84..509 | 1..426 | 2212 | 100 | Plus |
| CG8726-PA | 563 | CG8726-PA | 1..426 | 1..426 | 2212 | 100 | Plus |
| Slob-PG | 459 | CG43756-PG | 175..433 | 153..399 | 240 | 30.7 | Plus |
| Slob-PA | 515 | CG43756-PA | 231..489 | 153..399 | 240 | 30.7 | Plus |
