BO30557.complete Sequence
1831 bp assembled on 2011-11-10
GenBank Submission: KX797339
> BO30557.complete
GAAGTTATCAGTCGACATGAGTCGACATGAAGGTGTCAGCTGCGATTCAT
GTCTCAAGAGCAACTTCAACGGACGGCGCTACAAGTGCTTGATCTGCTAT
GACTACGATCTGTGTGCCGATTGCTACGAGGATGGCGTCACCTCCACGCG
CCATTTGGTCGAGCATCCCATGCAGTGCATCCTCACCCGCTCCGATATCG
AGCTGTACTTTGGCGGCGAGATGCTAGCCTCCGACCAGCCGCAGAGCTTC
ACCTGTCCCTACTGCAAGAAGATGGGCTTCAGCGACGCCACCCTGCTGGA
GCATGTCTCCGCCGAGCACACGGAGACCAGTCTAGAGGTGGTCTGCCCCG
TATGTGCCGGTCTGCCGGGCGGCGAGCCGAATCTAGTCACAGATGACTTT
GCCGGTCACCTCACCCTGGAGCATCGCCAGGGACCGCGCGAGCTGATTTC
CTTTCTGGATGAACCCTCGGCCATCCGTCATGGCGGTGGAGTGCGTCGCA
TCCCAGGACGCACCCTCGGTGGACCACGGACGCGTCGGTCCAACATGCAC
TTCAGTTCGTCTAGCGGTCTATCAGCCTTGTCGCCTTCGGGACGGGAATC
GGTGGATCCCATTGCGGAACTGTTATCGCAGCTTTCCGGCGTGCGGAGGG
GCGGACCGCCCACATCTCAGCTGCAGCAGCTACAGATGCAGATGCAGTTG
GATCGCCAGCAGGTGACGGCATCGCGCCAAATCGATCGGCTGCCAAGGCG
TGCGCATCCCATAGTCTCAACATCGAACTCGAATGCCGCCATGGCCGAGG
TGATCAGCGGCGGAGCGGGCGGCAGTGGAGGCAGTGGCGCAGTTGGAAGC
GGCAGTGGAGGCGGCAGCGGGGCAACTGCTCCGCCCAACCTGCGCACCAC
TGAGTGGCCGGTGACAGCCAGCTTCTCGACATCGGCCAGCAATCATTCGC
AAACTCAGTCGAGTCTGGCCGCCAACAGCCTCAATGCCAGAGAAGCGATC
GGAACGAGCAGCAGTGCAGGCAGCAATGTCCTGGGCATCAGCGTGGGCGT
CGGCGGAACGGCCAACGGCAACGGTGGAGCAGGTTCATCCGGTGTGGCAA
CTGGAGCCGGAGGAGCTGGACAGGGAGGAGGCCAGGGTGGTGCGGCAGCT
GGCGAGTCATTCTTGTTGGCCCAATTCATGCAGCCCACCTTTACCGAGGC
CGAGTGGGCGGTCGTGGAGAGTATGCGAGCAGATCGCTCCATGTTTGTGC
AGTCGCTGATGCTATCGATGCTCTGCACTGAGGCACTGGATTTGAATGCC
TCCGACGAGAGCCTGGCCAAGAGTGATAATGTAAATAAGGGGCAACAGCA
GCAGCAAGAGGATGCCGAGGCCGAGGCGCAAGCGGAAACGCTGTTGAACA
ACAATGCAGATGTGGAGCAGCAGCAGCAGCAGCAACAGCTACAGCCGGCG
ATGGTGCGACAGGTGAATCAAATGCAACAAACCTCGCCAGAGGACTTTGT
GTGCGACGAGTATCGCTATAAAAACAAAAAGGCCAACACAACACAAACGA
GCGGTACTGGCGGATTGGGGGGAGCTGGAGCAACTGCAGCCCCTGGTGGT
GGTGCTAGTGGAGCTGGCACTAAGCCAACAGCTGATAGAGGCATCGAGAG
GCGCAGCGGACGTCCGCCGCCAGGAGAGATGGCCACGGGCTCGCAGCAGC
CACAACAGCAGCAGCAGTCCACGGCTAATCCGGCAGCGTCTCAGCAAAAA
TACAAACAGAACGCTAGTGCAGCGACGGCGGCGGGAAACACAAATCAAAT
TCCCGACACTAGGGCAAGCTTTCTAGACCAT
BO30557.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 07:41:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11984-RI | 1800 | CG11984-PI | 1..1797 | 17..1813 | 8985 | 100 | Plus |
| CG11984-RH | 1800 | CG11984-PH | 1..1797 | 17..1813 | 8985 | 100 | Plus |
| CG11984-RG | 1800 | CG11984-PG | 1..1797 | 17..1813 | 8985 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 07:41:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11984-RI | 2545 | CG11984-RI | 355..2151 | 17..1813 | 8985 | 100 | Plus |
| CG11984-RH | 2445 | CG11984-RH | 255..2051 | 17..1813 | 8985 | 100 | Plus |
| CG11984-RG | 2488 | CG11984-RG | 298..2094 | 17..1813 | 8985 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 07:41:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9010676..9011253 | 1813..1236 | 2890 | 100 | Minus |
| 3R | 32079331 | 3R | 9012837..9013263 | 457..31 | 2135 | 100 | Minus |
| 3R | 32079331 | 3R | 9011673..9011950 | 995..718 | 1390 | 100 | Minus |
| 3R | 32079331 | 3R | 9012044..9012305 | 719..458 | 1310 | 100 | Minus |
| 3R | 32079331 | 3R | 9011363..9011604 | 1236..995 | 1210 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 07:41:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6731..6861 | 1343..1479 | 158 | 59.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6927 | 1573..1786 | 155 | 56.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6801..6910 | 1338..1447 | 154 | 63.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6752..6856 | 1343..1447 | 145 | 65.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2295..2411 | 1331..1447 | 142 | 63.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6806 | 1694..1779 | 130 | 67.4 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1069..1176 | 1693..1798 | 128 | 63.6 | Plus |
BO30557.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-10 10:07:06 Download gff for
BO30557.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11984-RF | 227..2023 | 17..1815 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:28:49 Download gff for
BO30557.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11984-RG | 298..2094 | 17..1815 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:01:50 Download gff for
BO30557.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11984-RG | 298..2094 | 17..1815 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:01:50 Download gff for
BO30557.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9011363..9011604 | 995..1236 | 100 | <- | Minus |
| 3R | 9011674..9011949 | 719..994 | 100 | <- | Minus |
| 3R | 9010674..9011252 | 1237..1815 | 99 | <- | Minus |
| 3R | 9012045..9012305 | 458..718 | 100 | <- | Minus |
| 3R | 9012837..9013261 | 33..457 | 100 | <- | Minus |
| 3R | 9013316..9013331 | 17..32 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:28:49 Download gff for
BO30557.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4836396..4836974 | 1237..1815 | 99 | <- | Minus |
| arm_3R | 4837085..4837326 | 995..1236 | 100 | <- | Minus |
| arm_3R | 4837396..4837671 | 719..994 | 100 | <- | Minus |
| arm_3R | 4837767..4838027 | 458..718 | 100 | <- | Minus |
| arm_3R | 4838559..4838983 | 33..457 | 100 | <- | Minus |
| arm_3R | 4839038..4839053 | 17..32 | 100 | | Minus |
BO30557.pep Sequence
Translation from 16 to 1831
> BO30557.pep
MSRHEGVSCDSCLKSNFNGRRYKCLICYDYDLCADCYEDGVTSTRHLVEH
PMQCILTRSDIELYFGGEMLASDQPQSFTCPYCKKMGFSDATLLEHVSAE
HTETSLEVVCPVCAGLPGGEPNLVTDDFAGHLTLEHRQGPRELISFLDEP
SAIRHGGGVRRIPGRTLGGPRTRRSNMHFSSSSGLSALSPSGRESVDPIA
ELLSQLSGVRRGGPPTSQLQQLQMQMQLDRQQVTASRQIDRLPRRAHPIV
STSNSNAAMAEVISGGAGGSGGSGAVGSGSGGGSGATAPPNLRTTEWPVT
ASFSTSASNHSQTQSSLAANSLNAREAIGTSSSAGSNVLGISVGVGGTAN
GNGGAGSSGVATGAGGAGQGGGQGGAAAGESFLLAQFMQPTFTEAEWAVV
ESMRADRSMFVQSLMLSMLCTEALDLNASDESLAKSDNVNKGQQQQQEDA
EAEAQAETLLNNNADVEQQQQQQQLQPAMVRQVNQMQQTSPEDFVCDEYR
YKNKKANTTQTSGTGGLGGAGATAAPGGGASGAGTKPTADRGIERRSGRP
PPGEMATGSQQPQQQQQSTANPAASQQKYKQNASAATAAGNTNQIPDTRA
SFLDH
BO30557.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:38:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11984-PI | 599 | CG11984-PI | 1..599 | 1..599 | 3093 | 100 | Plus |
| CG11984-PH | 599 | CG11984-PH | 1..599 | 1..599 | 3093 | 100 | Plus |
| CG11984-PG | 599 | CG11984-PG | 1..599 | 1..599 | 3093 | 100 | Plus |
| CG11984-PF | 599 | CG11984-PF | 1..599 | 1..599 | 3093 | 100 | Plus |
| CG11984-PE | 599 | CG11984-PE | 1..599 | 1..599 | 3093 | 100 | Plus |
