BO30562.complete Sequence
2008 bp assembled on 2011-11-09
GenBank Submission: KX798713
> BO30562.complete
GAAGTTATCAGTCGACATGGGCTCGTGCTCGTGTACGCGGCGACACTTTT
TGCTGTCAATATGCTTCCTGCAAGTGATAACGATTATCGAGCGCCAGGTA
TTCGACTTCCTCGGCTACATGTGGGCGCCTATCCTAGTGAACTTTTTCCA
CATTTTGTTCATCATATTCGGGTTTTACGGCGCCTACCACTTTCGCGTTA
AATACATCATCACCTATCTAATATGGAACTTCCTGTGGATCGGGTGGAAT
ACCTTCCTCATTTGCTTCTACTTAAATGTGGGGCAGTTGAACAGGGACAG
TGACCTGCTCAACCTGGGCACTGGCAGCGTCTCCTGGTTCGAGGCGAATG
GGTACGGTTGCAAGCCCACCTATAACATGGCCGCGGACGATACGTTCCGT
CCCCAGCGGCCGGAGCGCGTGGAAGGCTGCCTGCTGGACTACCCGCTGGT
GGAGATCACCCACTCGGGGGTACAGTGCGCTCTGGCGCTGCTCGGCATAC
TCGGTGCGATTCTGATTAGTTGCATATTTCTTGACGAGGACGACAGATTC
GATTTCATGAACGGCGACGCGAAGAGTCCACAGCATACCGTGGTGCACCC
AATGTACGTGAGCTATACAAGTATACCCACAACATCCGCAAGCGCCACCA
TGCAATCAAATAAGCATCTGCAACTGCAGCACCAGCAGCCGCAGCAGAAC
TCACTGAAACTCTATCATCATCAGCAACAACAGCAACCCAAACTACACCA
CTTCAATAAGAACTACCAGTTGAGCGGCAGCAACAATAATACACTGAATA
ATAATCTCCACCAGCGTGCGCCTGCGCTGCTGCCGCCAAACACAACAAAT
AACCGCAGCGCATCATTCCAAACTCAAAGTCACCCTTCAAACAACCATGT
AACTCAACGCACAGGCGGAGAGGGGAGCAACTGCAGTAGTCTACGCCGCC
ATCGACAACACCATTCCAAGGCACTCGTCAGCCCCAGTCCCATGTCACCT
CAGACCACGCCGTCGCTTTCGTACGCTTCCCTGCAAAACTCGAGTCCCTA
CCTAGCCGGAAACTCCCTTAGCAACAGCAACTACAGCATATTCCAGAGCC
CCGACTCGCTCCAGGGCAGTTCTCATTTCGCCCGTATTCATCACAAGCCC
AAGCCGCCCAAATCTGATTATCCTGTTTCTGGAGAATTCAATCCGGGCGG
GAATATATCCTCGCCTGTCCGTCCGCTCGATCGCCTGTCGCGCAGTCTCG
AGGACGACGAAGACAACTTTTCGCTGCAGAAGTTCGCTCCCGGCGAACAC
GGTGTCACCTACGTCCCTTTTCAAAGTCCTACTCCAAACAGCCTTTTTCT
GGGCGAGAACAACAACTCCCAGCCCCACCTCGTCTTTCACACCAACTCTC
GGTCTAGTCCCAACAACAATGCTTATCCCTACGACCAGAGCGGTTTGCCC
TCTTCCCTCCGTATGGGGTCAAACTCCAATGCCCGACGGCCGACTCACAT
TCCTCTGCCCACGGTTCCCATGCACAACTGCCAGGAGGTAGAAAATGATG
AGGACGCAGATGGCGAATCCGAGCAAGATCACGATCAGATGCTGACGCCT
CCGCCTCCGCCGTTAGTGCGGCCTCACATCCATCAACGCTTGGGTCAGGC
GCCCTACCTCGATCTCTCTCCGGAAGTGGCAGAGCGCTATGCGATTCCCA
GCAAGCTTGGACCCAGCCTTCCCATTCAAGTGCCACTCCCCGTCCCACAT
GGTTCGCCCATGGTACGTCGCAGTAATCGTCGACCTAGGCCATCCAATCC
CGTGAACTTTTGCGACCAGATTCGCGCTACACCTCCTGGTTATGTGGTAC
GCGCCCAGAGCGACGACCGTCTAATGGAGCAGGTCGAGGCTGATGCAGCA
CCGCACGTGAATCGTCGGAGCGGTCGCGGCGGTAGCGGTCAAAAGACCCG
TCCTCGGTCGTTCTGCAACTCGATAGTGGGCGTGCAGGGTGCAAGCTTTC
TAGACCAT
BO30562.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 07:36:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| NKAIN-RH | 1977 | CG34413-PH | 1..1974 | 17..1990 | 9870 | 100 | Plus |
| NKAIN-RG | 1977 | CG34413-PG | 1..1974 | 17..1990 | 9870 | 100 | Plus |
| NKAIN-RF | 1977 | CG34413-PF | 1..1974 | 17..1990 | 9870 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 07:36:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| NKAIN-RH | 3394 | CG34413-RH | 443..2416 | 17..1990 | 9870 | 100 | Plus |
| NKAIN-RG | 3659 | CG34413-RG | 708..2681 | 17..1990 | 9870 | 100 | Plus |
| NKAIN-RF | 3338 | CG34413-RF | 387..2360 | 17..1990 | 9870 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 07:36:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24884526..24885967 | 549..1990 | 7210 | 100 | Plus |
| 2R | 25286936 | 2R | 24883420..24883612 | 295..487 | 965 | 100 | Plus |
| 2R | 25286936 | 2R | 24883076..24883214 | 76..214 | 695 | 100 | Plus |
| 2R | 25286936 | 2R | 24883278..24883359 | 215..296 | 410 | 100 | Plus |
| 2R | 25286936 | 2R | 24883673..24883734 | 487..548 | 310 | 100 | Plus |
| 2R | 25286936 | 2R | 24882960..24883019 | 17..76 | 300 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 07:36:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2629 | 630..960 | 291 | 59.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6745..6906 | 623..793 | 229 | 64.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2393..2554 | 617..773 | 228 | 65.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6918 | 647..865 | 201 | 61.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6783..6901 | 611..736 | 197 | 68.5 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1059..1180 | 663..787 | 186 | 64.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2323..2452 | 663..791 | 182 | 64.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6818..6923 | 630..734 | 174 | 68.5 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1052..1216 | 631..800 | 171 | 58.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6709..6831 | 661..788 | 169 | 61.7 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3252..3379 | 640..765 | 166 | 60.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2370..2510 | 630..769 | 163 | 59.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2574..2688 | 650..773 | 140 | 61.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2719..2873 | 623..786 | 134 | 59.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1513..1578 | 672..737 | 123 | 65.2 | Plus |
| Doc3-element | 4740 | Doc3-element DOC3 4740bp | 497..573 | 652..731 | 123 | 63.7 | Plus |
BO30562.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-09 10:40:44 Download gff for
BO30562.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NKAIN-RG | 726..2699 | 17..1992 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:28:26 Download gff for
BO30562.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NKAIN-RF | 387..2360 | 17..1992 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:00:10 Download gff for
BO30562.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NKAIN-RF | 387..2360 | 17..1992 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:00:10 Download gff for
BO30562.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24882960..24883019 | 17..76 | 100 | -> | Plus |
| 2R | 24883077..24883214 | 77..214 | 100 | -> | Plus |
| 2R | 24883278..24883358 | 215..295 | 100 | -> | Plus |
| 2R | 24883421..24883612 | 296..487 | 100 | -> | Plus |
| 2R | 24883674..24883734 | 488..548 | 100 | -> | Plus |
| 2R | 24884526..24885967 | 549..1992 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:28:26 Download gff for
BO30562.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20770483..20770542 | 17..76 | 100 | -> | Plus |
| arm_2R | 20770600..20770737 | 77..214 | 100 | -> | Plus |
| arm_2R | 20770801..20770881 | 215..295 | 100 | -> | Plus |
| arm_2R | 20770944..20771135 | 296..487 | 100 | -> | Plus |
| arm_2R | 20771197..20771257 | 488..548 | 100 | -> | Plus |
| arm_2R | 20772049..20773490 | 549..1992 | 99 | | Plus |
BO30562.pep Sequence
Translation from 16 to 2008
> BO30562.pep
MGSCSCTRRHFLLSICFLQVITIIERQVFDFLGYMWAPILVNFFHILFII
FGFYGAYHFRVKYIITYLIWNFLWIGWNTFLICFYLNVGQLNRDSDLLNL
GTGSVSWFEANGYGCKPTYNMAADDTFRPQRPERVEGCLLDYPLVEITHS
GVQCALALLGILGAILISCIFLDEDDRFDFMNGDAKSPQHTVVHPMYVSY
TSIPTTSASATMQSNKHLQLQHQQPQQNSLKLYHHQQQQQPKLHHFNKNY
QLSGSNNNTLNNNLHQRAPALLPPNTTNNRSASFQTQSHPSNNHVTQRTG
GEGSNCSSLRRHRQHHSKALVSPSPMSPQTTPSLSYASLQNSSPYLAGNS
LSNSNYSIFQSPDSLQGSSHFARIHHKPKPPKSDYPVSGEFNPGGNISSP
VRPLDRLSRSLEDDEDNFSLQKFAPGEHGVTYVPFQSPTPNSLFLGENNN
SQPHLVFHTNSRSSPNNNAYPYDQSGLPSSLRMGSNSNARRPTHIPLPTV
PMHNCQEVENDEDADGESEQDHDQMLTPPPPPLVRPHIHQRLGQAPYLDL
SPEVAERYAIPSKLGPSLPIQVPLPVPHGSPMVRRSNRRPRPSNPVNFCD
QIRATPPGYVVRAQSDDRLMEQVEADAAPHVNRRSGRGGSGQKTRPRSFC
NSIVGVQGASFLDH
BO30562.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:37:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| NKAIN-PH | 658 | CG34413-PH | 1..658 | 1..658 | 3555 | 100 | Plus |
| NKAIN-PG | 658 | CG34413-PG | 1..658 | 1..658 | 3555 | 100 | Plus |
| NKAIN-PF | 658 | CG34413-PF | 1..658 | 1..658 | 3555 | 100 | Plus |
| NKAIN-PK | 658 | CG34413-PK | 1..658 | 1..658 | 3555 | 100 | Plus |
| NKAIN-PL | 199 | CG34413-PL | 1..196 | 1..196 | 1071 | 99.5 | Plus |
