Clone BO30563 Report

Search the DGRC for BO30563

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:305
Well:63
Vector:pDNR-Dual
Associated Gene/TranscriptCG13887-RD
Protein status:BO30563.pep: Imported from assembly
Sequenced Size:586

Clone Sequence Records

BO30563.complete Sequence

586 bp assembled on 2011-09-30

GenBank Submission: KX795842

> BO30563.complete
GAAGTTATCAGTCGACATGAGTTTGGTGTGGACTTTGATCGCCGGATTTC
TCTATGCGGAAATCGCACTGGTCCTTCTGCTGGTGCTGCCGGTGCTCACT
CCTTACCGCTGGAACCGGTTCTTCAAGTCCAAATTCCTATCGATGTTGGG
ACAACAGGCGCACATATATTTCCTGCTGATCATGGGAATTCTGGTCATTT
TCCTCCTGGAGGCCATTCGCGAGATGCGCAAGTACTCCGGCTTGCAGCAG
TCTAACGAGGTCCACTTGAACGTGGAGATGCAGCACAGCATGAAGCTGTT
CCGTGCCCAGCGGAACTTCTACATCTCTGGATTCGCCATTTTCCTTGCCC
TGGTCATCCGGCGACTGGTAAACTTGATCTGCACCCAGGCCAATCTCATG
GCCCAGAGCGAGGCTTCCTTCAAGCAGGCACAGAGCGCCACTGCAGCCGC
ACGTTCCTTGCTGGAGAACAAGAACACCGAGAAGGCCAAGGAAGCCGGCG
AGGATACCACTCTCATCGAGCTGTCAAGACTGCGGAGACGTGTGCAAGGA
CTCACCGCCCGAGTGTCCGCAAGCTTTCTAGACCAT

BO30563.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:13:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG13887-RD 555 CG13887-PD 1..552 17..568 2760 100 Plus
CG13887-RE 687 CG13887-PE 1..506 17..522 2530 100 Plus
CG13887-RB 687 CG13887-PB 1..506 17..522 2530 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:13:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG13887-RD 1306 CG13887-RD 158..709 17..568 2760 100 Plus
CG13887-RE 1446 CG13887-RE 261..766 17..522 2530 100 Plus
CG13887-RB 1262 CG13887-RB 261..766 17..522 2530 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:13:15
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 838121..838624 17..520 2520 100 Plus
3L 28110227 3L 839101..839150 519..568 250 100 Plus
Blast to na_te.dros performed on 2014-11-27 13:13:16 has no hits.

BO30563.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-30 10:53:14 Download gff for BO30563.complete
Subject Subject Range Query Range Percent Splice Strand
CG13887-RD 162..713 17..570 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 12:08:27 Download gff for BO30563.complete
Subject Subject Range Query Range Percent Splice Strand
CG13887-RD 158..709 17..570 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:13:31 Download gff for BO30563.complete
Subject Subject Range Query Range Percent Splice Strand
CG13887-RD 158..709 17..570 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:13:31 Download gff for BO30563.complete
Subject Subject Range Query Range Percent Splice Strand
3L 838121..838624 17..520 100 -> Plus
3L 839103..839150 521..570 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 12:08:27 Download gff for BO30563.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 838121..838624 17..520 100 -> Plus
arm_3L 839103..839150 521..570 96   Plus

BO30563.pep Sequence

Translation from 16 to 586

> BO30563.pep
MSLVWTLIAGFLYAEIALVLLLVLPVLTPYRWNRFFKSKFLSMLGQQAHI
YFLLIMGILVIFLLEAIREMRKYSGLQQSNEVHLNVEMQHSMKLFRAQRN
FYISGFAIFLALVIRRLVNLICTQANLMAQSEASFKQAQSATAAARSLLE
NKNTEKAKEAGEDTTLIELSRLRRRVQGLTARVSASFLDH

BO30563.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:26:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG13887-PD 184 CG13887-PD 1..184 1..184 901 100 Plus
CG13887-PE 228 CG13887-PE 1..181 1..181 866 97.2 Plus
CG13887-PB 228 CG13887-PB 1..181 1..181 866 97.2 Plus
CG13887-PC 228 CG13887-PC 1..181 1..181 866 97.2 Plus