BO30567.complete Sequence
505 bp assembled on 2011-09-30
GenBank Submission: KX799689
> BO30567.complete
GAAGTTATCAGTCGACATGATGCTTTTCATGCTGCTGTTTAGTCGGCAGG
GCAAACTGCGGTTACAAAAGTGGTACATGGCCTATCCGGATAAGGTGAAA
AAGAAGATCACCCGGGAACTGGTCACTACGATACTGGCCCGCAAGCCCAA
AATGTGCTCCTTTCTGGAGTGGAAGGACTGCAAAATTGTCTACAAAAGGT
ATGCCAGCTTGTATTTCTGTTGCGCCATCGAGCAGAACGACAACGAACTG
CTGACACTGGAGATCATTCATCGCTATGTGGAGCTGTTGGATAAGTACTT
CGGCAGCGTCTGCGAGCTGGACATTATCTTTAACTTTGAAAAAGCATACT
TTATCCTGGATGAGCTGCTCATTGGCGGCGAAATCCAGGAGACGTCCAAA
AAGAACGTACTTAAGGCGATTGCCTCGCAGGATCTGCTCCAAGAGGACGA
AGCCGTTGAGGGCACTTTAAGAGACATTGGACTCCTCGCAAGCTTTCTAG
ACCAT
BO30567.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:09:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
AP-1sigma-RC | 474 | CG5864-PC | 1..471 | 17..487 | 2355 | 100 | Plus |
AP-1sigma-RB | 474 | CG5864-PB | 1..471 | 17..487 | 2355 | 100 | Plus |
AP-1sigma-RA | 474 | CG5864-PA | 1..431 | 17..447 | 2155 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:09:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
AP-1sigma-RC | 795 | CG5864-RC | 146..616 | 17..487 | 2355 | 100 | Plus |
AP-1sigma-RB | 1181 | CG5864-RB | 146..616 | 17..487 | 2355 | 100 | Plus |
AP-1sigma-RA | 1079 | CG5864-RA | 146..576 | 17..447 | 2155 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 11:09:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23959031..23959212 | 19..200 | 910 | 100 | Plus |
3R | 32079331 | 3R | 23959456..23959594 | 308..446 | 695 | 100 | Plus |
3R | 32079331 | 3R | 23959278..23959390 | 197..309 | 565 | 100 | Plus |
3R | 32079331 | 3R | 23960896..23960939 | 444..487 | 220 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 11:09:53 has no hits.
BO30567.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-30 10:50:10 Download gff for
BO30567.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
AP-1sigma-RB | 143..613 | 17..489 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:26:26 Download gff for
BO30567.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
AP-1sigma-RB | 146..616 | 17..489 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:40:13 Download gff for
BO30567.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
AP-1sigma-RB | 146..616 | 17..489 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:40:13 Download gff for
BO30567.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23959030..23959210 | 17..198 | 99 | -> | Plus |
3R | 23959280..23959388 | 199..307 | 100 | -> | Plus |
3R | 23959456..23959593 | 308..445 | 100 | -> | Plus |
3R | 23960898..23960939 | 446..489 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:26:26 Download gff for
BO30567.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19784752..19784932 | 17..198 | 99 | -> | Plus |
arm_3R | 19785002..19785110 | 199..307 | 100 | -> | Plus |
arm_3R | 19785178..19785315 | 308..445 | 100 | -> | Plus |
arm_3R | 19786620..19786661 | 446..489 | 95 | | Plus |
BO30567.pep Sequence
Translation from 16 to 505
> BO30567.pep
MMLFMLLFSRQGKLRLQKWYMAYPDKVKKKITRELVTTILARKPKMCSFL
EWKDCKIVYKRYASLYFCCAIEQNDNELLTLEIIHRYVELLDKYFGSVCE
LDIIFNFEKAYFILDELLIGGEIQETSKKNVLKAIASQDLLQEDEAVEGT
LRDIGLLASFLDH
BO30567.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:25:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
AP-1sigma-PC | 157 | CG5864-PC | 1..157 | 1..157 | 809 | 100 | Plus |
AP-1sigma-PB | 157 | CG5864-PB | 1..157 | 1..157 | 809 | 100 | Plus |
AP-1sigma-PA | 157 | CG5864-PA | 1..156 | 1..156 | 761 | 94.9 | Plus |
AP-1sigma-PD | 152 | CG5864-PD | 1..145 | 1..145 | 746 | 99.3 | Plus |
AP-2sigma-PA | 142 | CG6056-PA | 1..142 | 1..142 | 366 | 46.5 | Plus |