BO30571.complete Sequence
2287 bp assembled on 2011-11-10
GenBank Submission: KX799855
> BO30571.complete
GAAGTTATCAGTCGACATGAAACTTCATGTGCTCTCCTGGCTGCTTTTCT
TTCTGGCACCCGGGGGTTGTCCCATATACAGCATCGACCTGGCTACTTTG
GAGGTGCCCACAAACGATTTCCAAAACGAACTGACCCTGCAATCCATGCT
CAGCTCGGAGCTGCGGGATTACCGCAATGGCCTGATCGAGACGGTCGATG
AACAGGTGACCAATCCTCCCTATTCCCCGCCGCGCAGATACCAAGAGCAT
GAATGGTTTAAGGATCTGCCCAACGAGCTGCAAAAGGCGACAAGGAGTAC
CACAGAATCGGACTCATTCCTGGGCACCAATCTGTTTGGCAACTACCGCA
AGAATTGCTTTTCCACGGAGGACATTGCTATCATATCTGCACGCAAAGAC
TTCGAGCTGCTGGTGCCGAAATCCTTTCCACAATCCCTTCTCACCGACAG
CCTTGTCTACATGCTTCTCCGGTACTTTAATACTGTTAACCAGATCGTGA
AGCGAATGTCAGACGATGATACGCGGCTCATCATGCAGAGAGCATTCTAC
GATGCCCTGGGTGGCTATCTGCGCTACTATCTGGTGCCCATGGCCCAGTT
ATCCTTCTATGCCGGACGCATCAAGCTGAACACCGTGGAGCGCTTGGTGA
ACATTTATCAGCAGTGCAAAACGACGCTCAATACGAACGGAAATGGGTGG
CGAGCTCCGGACAAGGATATATTGTCGCAGTTCAAGGTACGAAAGATCGA
ACCCGTCAAGCTGCCCAAGAGCTGCTATTCCCAGGAGGATGCCTCCAGCT
GTGCTCAACTGGATCAAACATGCATTTCCCAAGAGCCGGATCAAGGGAGC
ATGATTGTGAGCCTGCCTCGACTGGAGACGCTCGATGAGAATGGCTATAT
GGGCAACATATACTTGCCCTTTCGAAAGCGACGCATCTACAATCTGCGTT
CTCCCAAATCGGAATTTGTCGTGGTGAAGTTCTTCCAAACCCTAACCAAC
TGTCATCGGTTTCAGGGCATTAGCCAGGCTAATTACAATCGCCAGTTGCT
CGCCTGGATAAAGGAAAATCTGGAAATGCACTATGGCGATGATGTATTCT
ACCCGGGTCTGGGCGGTATTCTGCAGATTCAGGAGAGGCTGTCGAAAGAA
GCGAAGAATGCGGAGGAGGAGGCCCGGGCGCCAACCAATAAGAATGACGG
GCAGGGATCACCATCCTGTCCCAAAGAGGACTCCCGCAAGATGAGTCGCT
CCGCTATTCACTGGCAGGAGGCTTCAGGGCCAGTCGAGGAGTCGGGGCCG
GAGCCAATGCACCAGGACGAATGGCTTACCGGATTGGATAAGGTTCAGAG
TCGGCCGGAGGAAGTGGAAGAGTGCCGCGAGTGCGACAACGATGAGACAC
TGATCTGGTGCATTGCCGCCTTTCTGACCCTGCTTCTGCTCCTCATTCTG
CTCATCATTTGCTGTTGCATGCGAAGGGGCAGGAAGAAGAGGGTTGCCCC
AACGGATGCAGAGGCTCCTCCGCCGAAAGAGAGGCCAAGAAAAGAAAAGG
AGCCGCTGAAAGCCAAAGAACCAGAGAAGGAAAAAGAAAAAAAAGATGAA
AAGGACGAAAGTGATGCTACTCGGCGGTACTACTACTCCGGTTCTGGTCG
CTCCACCTCACAAAGATCGGTGCCGAGCAATCGATATGCGAATAATCCCG
AGCTAGATTCCTTCACCTCATCTTCGTCGCTGGGATGTCAGTTCAACAGG
AAGTGCATGCCACTGAAGTTCTCCCGAGCGAAAGGAGGGGACTACTACGC
ACCGGACAAGAGCCGAGATGCGGTGGGAAAGCAGGTCACATCCCTCAAAC
TTCTTTCCGATGATTCGTCTCCTAGCCGAGTTCCCTACAGGGACGTTTGT
AAGCCCGCTCTAAAGTCGACCCTATCCGTCATTCCCTCGTCGGACAGCGA
AGTGGACAGCAGAGAGGATAGACATCGACATAGGCATGCCCGCGAAGAAG
ACAGGCGGAAGAAGCATAAGGACTTTGAGACGGGTCGTAAGAAAGAGCAG
ACCAAATCCTCAGAAGACAAAAAGCAGCCATCACCAGAAAGGCGATTGTC
CAAACAAGTGAGGATAGCAACACCGGAAATGTACAAGGATACATCCGATG
ATCCTCTTCTGCACAGGAAGAAGTCGCAGGAGAAACCAGATGTCCCTGCC
GGTCGACAGAAGGGCGGTGCAGAGTATTTAAAGGACTCTCCCAGCTGGGA
AACGACTTTTGACGATAACGCAAGCTTTCTAGACCAT
BO30571.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 07:40:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31068-RC | 2256 | CG31068-PC | 1..2253 | 17..2269 | 11265 | 100 | Plus |
| CG31068-RB | 2253 | CG31068-PB | 1..2250 | 17..2269 | 11185 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 07:40:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31068-RC | 2419 | CG31068-RC | 75..2327 | 17..2269 | 11265 | 100 | Plus |
| CG31068-RB | 2416 | CG31068-RB | 75..2324 | 17..2269 | 11185 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 07:40:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27233772..27235438 | 17..1683 | 8335 | 100 | Plus |
| 3R | 32079331 | 3R | 27235497..27235861 | 1683..2047 | 1825 | 100 | Plus |
| 3R | 32079331 | 3R | 27236058..27236166 | 2116..2224 | 545 | 100 | Plus |
| 3R | 32079331 | 3R | 27235913..27235984 | 2046..2117 | 360 | 100 | Plus |
| 3R | 32079331 | 3R | 27236222..27236268 | 2223..2269 | 235 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 07:40:42 has no hits.
BO30571.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-10 10:07:05 Download gff for
BO30571.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31068-RC | 2..2254 | 17..2271 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:28:42 Download gff for
BO30571.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31068-RC | 75..2327 | 17..2271 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:01:34 Download gff for
BO30571.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31068-RC | 75..2327 | 17..2271 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:01:34 Download gff for
BO30571.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27235915..27235984 | 2048..2117 | 100 | -> | Plus |
| 3R | 27236060..27236166 | 2118..2224 | 100 | -> | Plus |
| 3R | 27236224..27236268 | 2225..2271 | 95 | | Plus |
| 3R | 27235497..27235861 | 1683..2047 | 100 | -> | Plus |
| 3R | 27233772..27235437 | 17..1682 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:28:42 Download gff for
BO30571.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 23059494..23061159 | 17..1682 | 100 | -> | Plus |
| arm_3R | 23061219..23061583 | 1683..2047 | 100 | -> | Plus |
| arm_3R | 23061637..23061706 | 2048..2117 | 100 | -> | Plus |
| arm_3R | 23061782..23061888 | 2118..2224 | 100 | -> | Plus |
| arm_3R | 23061946..23061990 | 2225..2271 | 95 | | Plus |
BO30571.pep Sequence
Translation from 16 to 2287
> BO30571.pep
MKLHVLSWLLFFLAPGGCPIYSIDLATLEVPTNDFQNELTLQSMLSSELR
DYRNGLIETVDEQVTNPPYSPPRRYQEHEWFKDLPNELQKATRSTTESDS
FLGTNLFGNYRKNCFSTEDIAIISARKDFELLVPKSFPQSLLTDSLVYML
LRYFNTVNQIVKRMSDDDTRLIMQRAFYDALGGYLRYYLVPMAQLSFYAG
RIKLNTVERLVNIYQQCKTTLNTNGNGWRAPDKDILSQFKVRKIEPVKLP
KSCYSQEDASSCAQLDQTCISQEPDQGSMIVSLPRLETLDENGYMGNIYL
PFRKRRIYNLRSPKSEFVVVKFFQTLTNCHRFQGISQANYNRQLLAWIKE
NLEMHYGDDVFYPGLGGILQIQERLSKEAKNAEEEARAPTNKNDGQGSPS
CPKEDSRKMSRSAIHWQEASGPVEESGPEPMHQDEWLTGLDKVQSRPEEV
EECRECDNDETLIWCIAAFLTLLLLLILLIICCCMRRGRKKRVAPTDAEA
PPPKERPRKEKEPLKAKEPEKEKEKKDEKDESDATRRYYYSGSGRSTSQR
SVPSNRYANNPELDSFTSSSSLGCQFNRKCMPLKFSRAKGGDYYAPDKSR
DAVGKQVTSLKLLSDDSSPSRVPYRDVCKPALKSTLSVIPSSDSEVDSRE
DRHRHRHAREEDRRKKHKDFETGRKKEQTKSSEDKKQPSPERRLSKQVRI
ATPEMYKDTSDDPLLHRKKSQEKPDVPAGRQKGGAEYLKDSPSWETTFDD
NASFLDH
BO30571.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:37:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31068-PC | 751 | CG31068-PC | 1..751 | 1..751 | 3965 | 100 | Plus |
| CG31068-PB | 750 | CG31068-PB | 1..750 | 1..751 | 3948 | 99.9 | Plus |
