Clone BO30572 Report

Search the DGRC for BO30572

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:305
Well:72
Vector:pDNR-Dual
Associated Gene/TranscriptSclp-RB
Protein status:BO30572.pep: Imported from assembly
Sequenced Size:559

Clone Sequence Records

BO30572.complete Sequence

559 bp assembled on 2011-09-30

GenBank Submission: KX794546

> BO30572.complete
GAAGTTATCAGTCGACATGGCGCACTTGGTGGTTAGGGTGATTGAGCGTT
GTGAGAATGCCAACGAAAGTGCTCATTTAGATCTTTCAAGTTGTGAACTG
ATGCAAATACCAGATGCGGTATATCATCTTATGCGAAACACAGAGTTGAT
CACCTGCAATCTCAGTGGCAATGTGCTCAAAAGCGTTTCGCCCAAGTTTT
CGCAAAAGTTTAGTACCATCACAGATCTTAATCTGTCACACAACAAACTG
TCGAGGCTGCCAGAAGAATTCGCCAGCTTGTCTGCGCTAACCAAGCTGAA
TATCTCGAACAATTCATTTATCGTTTTGCCACAAGTAGTCTTTAAGCTTC
AGAGTCTTGCCAGTCTGGATGCCCAGAACAATGCCATTTTGGAAATTGAT
ACCGATGAGGCAATTACCAGTGACAATTTGGCCCTCGTTGATCTTCGGAA
TAATCCGCTGAGCAGAAACTGCCGACGAAAGCTGCAGAGCTTCAAGACCC
CCTTCCACCTTGAGATCTCCAAGGATGTTGAAGACGACTGGGCAAGCTTT
CTAGACCAT

BO30572.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:44:23
Subject Length Description Subject Range Query Range Score Percent Strand
Sclp-RB 528 CG2471-PB 1..525 17..541 2610 99.8 Plus
Sclp-RC 1020 CG2471-PC 286..747 80..541 2295 99.8 Plus
Sclp-RA 750 CG2471-PA 286..747 80..541 2295 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:44:25
Subject Length Description Subject Range Query Range Score Percent Strand
Sclp-RB 770 CG2471-RB 110..634 17..541 2610 99.8 Plus
Sclp-RC 1766 CG74-RC 505..966 80..541 2295 99.8 Plus
Sclp-RA 1102 CG2471-RA 505..966 80..541 2295 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:44:22
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11921998..11922168 392..222 855 100 Minus
X 23542271 X 11921783..11921932 541..392 735 99.3 Minus
X 23542271 X 11922230..11922375 224..79 730 100 Minus
X 23542271 X 11922588..11922651 80..17 320 100 Minus
Blast to na_te.dros performed on 2014-11-27 12:44:22 has no hits.

BO30572.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-30 10:50:11 Download gff for BO30572.complete
Subject Subject Range Query Range Percent Splice Strand
Sclp-RB 110..634 17..543 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:29:27 Download gff for BO30572.complete
Subject Subject Range Query Range Percent Splice Strand
Sclp-RB 110..634 17..543 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:03:25 Download gff for BO30572.complete
Subject Subject Range Query Range Percent Splice Strand
Sclp-RB 110..634 17..543 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:03:25 Download gff for BO30572.complete
Subject Subject Range Query Range Percent Splice Strand
X 11922230..11922373 81..224 100 <- Minus
X 11922588..11922651 17..80 100   Minus
X 11921781..11921931 393..543 98 <- Minus
X 11921998..11922165 225..392 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:29:27 Download gff for BO30572.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 11815814..11815964 393..543 98 <- Minus
arm_X 11816031..11816198 225..392 100 <- Minus
arm_X 11816263..11816406 81..224 100 <- Minus
arm_X 11816621..11816684 17..80 100   Minus

BO30572.pep Sequence

Translation from 16 to 559

> BO30572.pep
MAHLVVRVIERCENANESAHLDLSSCELMQIPDAVYHLMRNTELITCNLS
GNVLKSVSPKFSQKFSTITDLNLSHNKLSRLPEEFASLSALTKLNISNNS
FIVLPQVVFKLQSLASLDAQNNAILEIDTDEAITSDNLALVDLRNNPLSR
NCRRKLQSFKTPFHLEISKDVEDDWASFLDH

BO30572.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:25:35
Subject Length Description Subject Range Query Range Score Percent Strand
Sclp-PB 175 CG2471-PB 1..175 1..175 883 100 Plus
Sclp-PA 249 CG2471-PA 79..249 5..175 828 95.3 Plus
Sclp-PC 339 CG2471-PC 79..249 5..175 828 95.3 Plus
f-cup-PE 620 CG9611-PE 442..572 16..148 188 37.8 Plus
f-cup-PB 650 CG9611-PB 472..602 16..148 188 37.8 Plus