BO30581.complete Sequence
2533 bp assembled on 2011-12-14
GenBank Submission: KX795864
> BO30581.complete
GAAGTTATCAGTCGACATGGCCACCTCAACGCTGCAATCTCCGTCGCCGT
CGCCATCAAACGCCTCCGTGTCATCCAAGAATCCGCAGCTGAAGCGCGTA
GTGTACTCCAAATATCGGGAACTACTTGGTTCTTATAATGATAAGGCCAA
TGCCATCATCGACACTCTGCCCGCATATATGGTTCGTCAGGATCGCGGAT
TTCAGTTGTCGGAGCTGCCCGTGAACGGGGATGCCAATCGCAACGGCCTG
GAATTGTCGTATGGACAGCGCGGAGGAGGCGGATCCGGAAACGGTGGCTA
CGAGGCGCCCGCGTGCGTGCAGAACGCGATGATGACAAAAGACAAGAAGC
CCTTCACCTACACGCCCGGCGGCATTGATCTCTCCCAGATCCGGTCGGAG
CGGATGGCCAAGCGGTTGGCGCGCAATGCCCAATCGGAAGGAGCAACCGG
AGCCGCCCAACAGAACAGACCCGCCCAGCCACAGTCGCCAGGTGGGCCAG
GTGGTGCAGCCAGTTCGATTGGAGCCGCTGCCATGGGCATGCCGTTCCAG
GTGCTGCCGCCGCCACCACCGCCGCCGCAACCACAGTCGGGTAAGAATGG
CACCCAAGGTGCTAGCGCCGCACCCCCACCACCACCCCCACAACAACCCA
GCACATTAGCGCCACCCACTGGGCGCCTAAGTGCCCCTGGTTCCCCGGCT
ACGGCGCGCAAATCGCCAACTCCACAGCGTTTTGAGCCACCACCACTGGG
ATTCCGGCCGGAGATCAAGATACCGCCAAATCCCATGGCTGCACTGCGCA
AGGTGGCACCGCCCGTGGAGAAGAACACGTTCTGGAAGGACGAGTACATT
AAGGATCGCTCCAAGAGTCCGCTGCCCGAGGTGGCACCTGCTGCGAATGG
AGGATATAGCAGCACCACATCCGATGCCGTTGATGGTCCAAGACCATCGG
CGGCTAGCGTTGAAAGCAGCTACAGTCCTTACACTCCGACTCCGCAAGTG
CCGCCCGTGGCCAAGAGTCCTCCGGTGCAATATCAACAGCCAACGCCACC
GGCAACACCGCCGCAGCAGCAGCAGCAACAGTCGGAGCAGCAGCCTGCAA
CACGCCCGGAGTTCCGCAGTGTGCCCATGCCCACATCGCCAGCGGTGAAC
GTCTACACACGTCAATCGGACAGTCCCAGATCGCCTTTCGAGCCGCAGCA
ACAGCAGCAGCAGCAGCAACCACAGCGATCCACTGAGAGCCCCTTCCGGT
TTGCACAGCAGCAACAGCAACAGTCACCGCAGCAGCGTCCACCAACAGCG
ATATCGCCGCTGGCTCAGGTGCAGCAGCAGCAGCAACAGCAGTTGCAACA
GCAGCAGCAACAGCAGTTGCAACAGCAGCAGCAACAGCAGTTGCAACAGC
AGCAGCAACAGCTCCAGCAGCTGCAGCAACAGCAGTTCCAGCAGCAACAA
TTGCAGCAACAACAGTTCCAGCAACAACAGTTGCAGCAGCAGCAACAGCA
GCAACAGCAGCAACAGCAGCAGCAACAGCAGCAGCAACCGGCTGTTCAAT
CAGTACCATGGCGCACTCAACGTGCTCAGCCTGGAGCACAACAGCAACAG
GATTCGCATCCACAACCAATCTACAACAATGTTCAGCAGCAGCAACAAAG
ATCTCGCGATGTCTTCAGTCCGGCAAGGAATGAAACATCGGCAGCAAACA
CGTTCAATTCACAGCAGCAACAAAACCAATTTGGTGGAGCAGCAAAGCCG
ACCAACGTTGGATCGCTTTACATAGCTCCACTGGCCCAGCCCACTGAACC
GCAGGCTCAACGAATCCTTTTGCAACAGCAGCAGCAGTCATCTGCTCGGG
ATTCTCCCATGCGCCAACTTCCACAGCAGCAGCCGCAGACCAATCAACCG
ATGAGATGGCTCAGTTCACAGCCGGCTAGCAAGGAGCAGGCTCCATGGGC
TCGTCTCGAGGAGAATGGCAACGTCCTGCCCTCCACCTTGCGTCAGACTA
CCCCGCAGCCCCAAGTCGTCCCTCAGCAGCAACCACAGCAGCAGCAGCAG
CCACAGCAGCAGCAGCAGCCCACCTTCTACCAGCCGCAGTTGGTCCAAGG
TAATGGCTACGGACCAACACCGGTTTCAGCCGCTCCCATCAGTCTGCAGA
ACTTCGGATCAAATCCACAGCCTGGAGGACTACGTTTGCAGATCAACTTA
AACACCAATGGCAACAGCAGCAATAACACAAATCAAAGTGCTCCACGGGA
GCGTATCATACCGATAACTCTAGAGCAGACGCCGACATATGCCGCAGCCC
AGCCCAACTTTGGTGGTAATGGAGTCTCCGCTCAGAACCGATTCACGCAA
CAACGATATGATGCCCCCCAACAACAACAGCAATATGTGCCTCCAAGTGA
ACAGCAAGCTCCGGAACCCAAAAAATACACAGGCAGCGCTATACCCAGTC
GATCATTCAAAATTCTACAGGCAATGACAACACCTGAAAATGCCGGACCT
GGTCAATCGGATCTAGCAAGCTTTCTAGACCAT
BO30581.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 07:58:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG44085-RL | 2502 | CG44085-PL | 1..2499 | 17..2515 | 12495 | 100 | Plus |
| CG44085-RI | 2502 | CG44085-PI | 1..2499 | 17..2515 | 12495 | 100 | Plus |
| CG44085-RN | 3024 | CG44085-PN | 1..2301 | 17..2317 | 11505 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 07:58:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG44085-RL | 3418 | CG44085-RL | 257..2755 | 17..2515 | 12495 | 100 | Plus |
| CG44085-RI | 3661 | CG44085-RI | 500..2998 | 17..2515 | 12495 | 100 | Plus |
| CG44085-RN | 3940 | CG44085-RN | 257..2557 | 17..2317 | 11505 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 07:58:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13272233..13273048 | 935..1750 | 4080 | 100 | Plus |
| 2L | 23513712 | 2L | 13271296..13271974 | 259..937 | 3395 | 100 | Plus |
| 2L | 23513712 | 2L | 13273618..13274117 | 1750..2249 | 2500 | 100 | Plus |
| 2L | 23513712 | 2L | 13267731..13267975 | 17..261 | 1225 | 100 | Plus |
| 2L | 23513712 | 2L | 13276377..13276513 | 2360..2496 | 685 | 100 | Plus |
| 2L | 23513712 | 2L | 13274309..13274380 | 2248..2319 | 360 | 100 | Plus |
| 2L | 23513712 | 2L | 13276246..13276291 | 2315..2360 | 230 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 07:58:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2310..2659 | 1280..1647 | 565 | 66.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6730..7192 | 1255..1729 | 553 | 61.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6893 | 1359..1538 | 535 | 79.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2324..2824 | 1255..1728 | 518 | 61.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2335..2665 | 1191..1533 | 518 | 65.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2311..2658 | 1191..1538 | 516 | 64.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6719..7183 | 1187..1648 | 511 | 61.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6694..7087 | 1183..1589 | 484 | 61.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6535..7003 | 1255..1729 | 433 | 60.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6756..7092 | 1191..1543 | 404 | 62 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2398..2961 | 1191..1752 | 400 | 58.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2310..2513 | 1439..1648 | 381 | 67.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2771..3034 | 1255..1515 | 377 | 62.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2145..2996 | 1318..2231 | 354 | 56.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2596..2999 | 1032..1435 | 345 | 58.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6798..7207 | 1191..1628 | 319 | 59 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6520..6942 | 1310..1722 | 279 | 57.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6834..7199 | 1191..1538 | 272 | 58 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6531..6892 | 1368..1729 | 247 | 57.4 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1071..1171 | 1191..1291 | 163 | 65 | Plus |
| Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 658..728 | 1555..1484 | 141 | 68.1 | Minus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3210..3318 | 1790..1898 | 139 | 60.9 | Plus |
BO30581.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-14 10:03:48 Download gff for
BO30581.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6043-RN | 3057..3260 | 2313..2517 | 97 | | Plus |
| CG6043-RN | 240..2535 | 17..2312 | 100 | -> | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:30:17 Download gff for
BO30581.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG44085-RI | 500..2998 | 17..2517 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:08:07 Download gff for
BO30581.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG44085-RI | 500..2998 | 17..2517 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:08:07 Download gff for
BO30581.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13267731..13267972 | 17..258 | 100 | -> | Plus |
| 2L | 13271296..13271972 | 259..935 | 100 | -> | Plus |
| 2L | 13272234..13273048 | 936..1750 | 100 | -> | Plus |
| 2L | 13273619..13274116 | 1751..2248 | 100 | -> | Plus |
| 2L | 13274310..13274376 | 2249..2315 | 100 | -> | Plus |
| 2L | 13276247..13276291 | 2316..2360 | 100 | -> | Plus |
| 2L | 13276378..13276512 | 2361..2495 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:30:17 Download gff for
BO30581.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13267731..13267972 | 17..258 | 100 | -> | Plus |
| arm_2L | 13271296..13271972 | 259..935 | 100 | -> | Plus |
| arm_2L | 13272234..13273048 | 936..1750 | 100 | -> | Plus |
| arm_2L | 13273619..13274116 | 1751..2248 | 100 | -> | Plus |
| arm_2L | 13274310..13274376 | 2249..2315 | 100 | -> | Plus |
| arm_2L | 13276247..13276291 | 2316..2360 | 100 | -> | Plus |
| arm_2L | 13276378..13276512 | 2361..2495 | 100 | -> | Plus |
BO30581.pep Sequence
Translation from 16 to 2533
> BO30581.pep
MATSTLQSPSPSPSNASVSSKNPQLKRVVYSKYRELLGSYNDKANAIIDT
LPAYMVRQDRGFQLSELPVNGDANRNGLELSYGQRGGGGSGNGGYEAPAC
VQNAMMTKDKKPFTYTPGGIDLSQIRSERMAKRLARNAQSEGATGAAQQN
RPAQPQSPGGPGGAASSIGAAAMGMPFQVLPPPPPPPQPQSGKNGTQGAS
AAPPPPPPQQPSTLAPPTGRLSAPGSPATARKSPTPQRFEPPPLGFRPEI
KIPPNPMAALRKVAPPVEKNTFWKDEYIKDRSKSPLPEVAPAANGGYSST
TSDAVDGPRPSAASVESSYSPYTPTPQVPPVAKSPPVQYQQPTPPATPPQ
QQQQQSEQQPATRPEFRSVPMPTSPAVNVYTRQSDSPRSPFEPQQQQQQQ
QPQRSTESPFRFAQQQQQQSPQQRPPTAISPLAQVQQQQQQQLQQQQQQQ
LQQQQQQQLQQQQQQLQQLQQQQFQQQQLQQQQFQQQQLQQQQQQQQQQQ
QQQQQQQPAVQSVPWRTQRAQPGAQQQQDSHPQPIYNNVQQQQQRSRDVF
SPARNETSAANTFNSQQQQNQFGGAAKPTNVGSLYIAPLAQPTEPQAQRI
LLQQQQQSSARDSPMRQLPQQQPQTNQPMRWLSSQPASKEQAPWARLEEN
GNVLPSTLRQTTPQPQVVPQQQPQQQQQPQQQQQPTFYQPQLVQGNGYGP
TPVSAAPISLQNFGSNPQPGGLRLQINLNTNGNSSNNTNQSAPRERIIPI
TLEQTPTYAAAQPNFGGNGVSAQNRFTQQRYDAPQQQQQYVPPSEQQAPE
PKKYTGSAIPSRSFKILQAMTTPENAGPGQSDLASFLDH
BO30581.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:40:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG44085-PL | 833 | CG44085-PL | 1..833 | 1..833 | 4360 | 100 | Plus |
| CG44085-PI | 833 | CG44085-PI | 1..833 | 1..833 | 4360 | 100 | Plus |
| CG44085-PN | 1007 | CG44085-PN | 1..801 | 1..808 | 4057 | 96.3 | Plus |
| CG44085-PC | 836 | CG44085-PC | 1..804 | 1..808 | 4043 | 95.9 | Plus |
| CG44085-PK | 979 | CG44085-PK | 1..850 | 1..832 | 4033 | 92.3 | Plus |
