BO30593.complete Sequence
853 bp assembled on 2011-09-30
GenBank Submission: KX796863
> BO30593.complete
GAAGTTATCAGTCGACATGCATTCCAAGGGAAATAACCAGTGCTTACTGT
TCACCTTGGTTTTGGGCTTACTGGGAGGCGCGGGACATTGTTATGTAGTC
GAACCACCTATCGTTCACGTGGAAATGGAAAAAGCCGGCATGCACAGGAC
CCTTAATTACCGTCTGCGGTTCGATATACCCTTGGTGGGCAAGGACTGCG
AGTATGCGCTGGTCCAGGATTTGCCCGCATCCGTTTACATAAGCACAGAC
GAACTGGATGACCTGCAGCGTTTGAAGAGGTTAAATGCCATCTATCCTAA
GTTCGTCAACATTGAAGTAGCCACGGAACGGGCGCAGCCCTTCTCCGTTT
TACTGCGCGGTACACCAAAGATTACGGAATCGCTGGCTCTGCCCGTGCAT
TTTCGCTACCATGCCCCCAGTGATAAGCGTTTGGCGGCAACGGTGGCCAT
ACCCCTACCCGAGCTCTATCTCAACTGCCCGATGGCTGATAGTGCGCTCA
TCGAAAACGAGTTGGTTGCCCGGCCCGATAAGCTGTACTGCCTGAATGCG
CCGGAAAGCCGTTTCGACGAGAACCATATCAAGGATGGCCAACCCACGAC
CATGGCTAATCTGGAGCGCTGCAACTGGAGGCGGGTGCACGTGGACTGCC
AGCTAAAGATGCCGCTGCGTGCCGAGATTCCGGTAGGCCATGCTAGCGCC
TACGGTCCAGTTCTGTGCGGCACCATCCTGCTAGGTTGGTCTCTGGCCCT
GTGGACCATCATCCACTCGATGGCCAACACGCGACGCATCAATCAGCGCC
TCAACGAGCAGCGACTTCTGCAGCAAAAAGTCAAGGCAAGCTTTCTAGAC
CAT
BO30593.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:49:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30381-RB | 714 | CG30381-PB | 1..711 | 125..835 | 3555 | 100 | Plus |
| CG30381-RC | 732 | CG30381-PC | 39..729 | 145..835 | 3455 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:49:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30381-RB | 1177 | CG30381-RB | 33..851 | 17..835 | 4095 | 100 | Plus |
| CG30381-RC | 1195 | CG30381-RC | 33..869 | 17..835 | 3880 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:49:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7929984..7930390 | 835..429 | 2035 | 100 | Minus |
| 2R | 25286936 | 2R | 7930452..7930601 | 429..280 | 750 | 100 | Minus |
| 2R | 25286936 | 2R | 7930660..7930795 | 280..145 | 680 | 100 | Minus |
| 2R | 25286936 | 2R | 7930853..7930984 | 148..17 | 660 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 12:49:21 has no hits.
BO30593.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-30 10:50:17 Download gff for
BO30593.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30381-RB | 33..851 | 17..837 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:37:48 Download gff for
BO30593.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30381-RB | 33..851 | 17..837 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:05:28 Download gff for
BO30593.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30381-RB | 33..851 | 17..837 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:05:28 Download gff for
BO30593.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7929982..7930389 | 430..837 | 99 | <- | Minus |
| 2R | 7930452..7930600 | 281..429 | 100 | <- | Minus |
| 2R | 7930660..7930792 | 148..280 | 100 | <- | Minus |
| 2R | 7930854..7930984 | 17..147 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:37:48 Download gff for
BO30593.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3817957..3818105 | 281..429 | 100 | <- | Minus |
| arm_2R | 3818165..3818297 | 148..280 | 100 | <- | Minus |
| arm_2R | 3818359..3818489 | 17..147 | 100 | | Minus |
| arm_2R | 3817487..3817894 | 430..837 | 99 | <- | Minus |
BO30593.pep Sequence
Translation from 16 to 853
> BO30593.pep
MHSKGNNQCLLFTLVLGLLGGAGHCYVVEPPIVHVEMEKAGMHRTLNYRL
RFDIPLVGKDCEYALVQDLPASVYISTDELDDLQRLKRLNAIYPKFVNIE
VATERAQPFSVLLRGTPKITESLALPVHFRYHAPSDKRLAATVAIPLPEL
YLNCPMADSALIENELVARPDKLYCLNAPESRFDENHIKDGQPTTMANLE
RCNWRRVHVDCQLKMPLRAEIPVGHASAYGPVLCGTILLGWSLALWTIIH
SMANTRRINQRLNEQRLLQQKVKASFLDH
BO30593.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:25:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30381-PB | 237 | CG30381-PB | 1..237 | 37..273 | 1243 | 100 | Plus |
| CG30381-PC | 243 | CG30381-PC | 1..243 | 37..273 | 1226 | 97.5 | Plus |
