Clone BO30604 Report

Search the DGRC for BO30604

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:306
Well:4
Vector:pDNR-Dual
Associated Gene/TranscriptCG12077-RB
Protein status:BO30604.pep: Imported from assembly
Sequenced Size:892

Clone Sequence Records

BO30604.complete Sequence

892 bp assembled on 2011-09-30

GenBank Submission: KX798867

> BO30604.complete
GAAGTTATCAGTCGACATGGTAAAAAATGGGCAATCGAAACGGCAGCCAT
GGGTGAAGAACCTGTACTCCAACCGGGAATATCCGGACAACTACACGGAT
GCCAGCTTTCTGAAGGATCTGCGCACGAATCTACATTGTAGAATATACAC
GTTCGGCGAAGCAATTGCCGGTATTACAGTGCTTAATAATCAGATCTCCT
GCATCACCGGCTTCCTAATACTCTACCAACTTATGCTCAGCGACAGCGTG
TCGCCCACCACGATCCTGGTACCCAGTTGCGGGATCACAGGCATTGGATA
CCTGTGCTACCGAGGAAGGAGTCTCAGCTGGGCCCTGCTGGGCGAGGATT
CCAAAACCCTGGTCACAGTGGTCCTCTTCGGCTACTTATTCTCACCGATG
CTGCACACCCTAACGCAGGCCATCAGCACGGACACCATATACACAATGAC
CTTCTTTGTCCTTCTGGGCAACCTGATATTTGGACACTATGGATTGGATG
TAGCCATGGTCTCTAAGGCCGTCTCGTTGAATGCCGCCATATTTGGAGCA
ATTTGCTTAGCCTCCCGCCTGCCGACTTCGTATCACGCCTTCGTGCTCCT
TGTCGAGGCTGCCGTCTTTTTCGTCCTTTATCCCATAATGACGGAAGCGA
ATTGGCATGCTGGATTCATGTTGCCTATATTTGCAATATGCTGTATGGCG
CTGTACTGTATATCGCGCCCGGTGCTCTATCTCTACGCCTCCACCACCAT
TTTCATCAACTTTGTCTGCCCGTTCATATTCGTGTGGCAGCAGCAGTACA
AGTTCAACATTCACGGGCCCTGGGACGAGGCCATCGTGGAGGAGAACACC
GAGGAGAACCTGGATGGGAACTTAGCAAGCTTTCTAGACCAT

BO30604.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:16:51
Subject Length Description Subject Range Query Range Score Percent Strand
PIG-C-RB 861 CG12077-PB 1..858 17..874 4290 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:16:52
Subject Length Description Subject Range Query Range Score Percent Strand
PIG-C-RB 1103 CG12077-RB 41..898 17..874 4290 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:16:49
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3318691..3319192 518..17 2510 100 Minus
3L 28110227 3L 3318233..3318591 874..516 1795 100 Minus
Blast to na_te.dros performed on 2014-11-27 13:16:50 has no hits.

BO30604.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-30 10:53:17 Download gff for BO30604.complete
Subject Subject Range Query Range Percent Splice Strand
CG12077-RB 41..898 17..876 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 12:18:18 Download gff for BO30604.complete
Subject Subject Range Query Range Percent Splice Strand
PIG-C-RB 41..898 17..876 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:14:46 Download gff for BO30604.complete
Subject Subject Range Query Range Percent Splice Strand
PIG-C-RB 41..898 17..876 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:14:46 Download gff for BO30604.complete
Subject Subject Range Query Range Percent Splice Strand
3L 3318229..3318589 518..876 99 <- Minus
3L 3318692..3319192 17..517 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 12:18:18 Download gff for BO30604.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3318229..3318589 518..876 99 <- Minus
arm_3L 3318692..3319192 17..517 100   Minus

BO30604.pep Sequence

Translation from 16 to 892

> BO30604.pep
MVKNGQSKRQPWVKNLYSNREYPDNYTDASFLKDLRTNLHCRIYTFGEAI
AGITVLNNQISCITGFLILYQLMLSDSVSPTTILVPSCGITGIGYLCYRG
RSLSWALLGEDSKTLVTVVLFGYLFSPMLHTLTQAISTDTIYTMTFFVLL
GNLIFGHYGLDVAMVSKAVSLNAAIFGAICLASRLPTSYHAFVLLVEAAV
FFVLYPIMTEANWHAGFMLPIFAICCMALYCISRPVLYLYASTTIFINFV
CPFIFVWQQQYKFNIHGPWDEAIVEENTEENLDGNLASFLDH

BO30604.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:26:32
Subject Length Description Subject Range Query Range Score Percent Strand
PIG-C-PB 286 CG12077-PB 1..286 1..286 1511 100 Plus