BO30607.complete Sequence
487 bp assembled on 2012-04-24
GenBank Submission: KX797128
> BO30607.complete
GAAGTTATCAGTCGACATGATGGTTAGCAAATTGTGGAACAGCTGCTTCC
CGGAGTTCACCCCGGACCATGTGCATCGACACAACTTTTACCTATGCCAG
TGGCAACGGAACACGCAGGTGCGCATCGTTTACCTGTTCTACCGATGGAT
AACGGCCATCACCTGCCTGGCGGCACTGGTCTGCTCCTTGCTGGACATTG
GGCGCACGGACGAGCACTTTGAGCACCACTATGCCAAGTGGTGGATCTAC
CTGACCCACTGGGGACTGCTCTTCTGCACAGTCCAGGCCTGGCTGGCCGC
CTGGATAGTGACCCAGGGCATGATGGTGGAGCGCGAGGACTTCGAGATTG
TGCGGCAGGCGAAGAAGAGCCGCCTGCACCACTTGTACTGGGTGCTCTAC
ACCTGTGCCACTGTCTATGCGTTCATCGTCACCATGTGCTATTGGCTACT
GGTCCACAATCCCGGTAAGGCAAGCTTTCTAGACCAT
BO30607.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:08:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG43778-RC | 1992 | CG43778-PC | 1537..1989 | 17..469 | 2265 | 100 | Plus |
| CG43778-RA | 2892 | CG43778-PA | 1537..1984 | 17..464 | 2240 | 100 | Plus |
| CG43778-RD | 1356 | CG43778-PD | 1..448 | 17..464 | 2240 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:08:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG43778-RC | 2595 | CG43778-RC | 2027..2479 | 17..469 | 2265 | 100 | Plus |
| CG43778-RA | 6433 | CG43778-RA | 2027..2474 | 17..464 | 2240 | 100 | Plus |
| CG43778-RD | 6433 | CG43778-RD | 2027..2474 | 17..464 | 2240 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:08:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13307930..13308300 | 469..99 | 1855 | 100 | Minus |
| 2L | 23513712 | 2L | 13308410..13308493 | 100..17 | 420 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 05:08:14 has no hits.
BO30607.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-24 17:01:19 Download gff for
BO30607.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16970-RB | 2006..2458 | 17..471 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:29:39 Download gff for
BO30607.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43778-RC | 2027..2479 | 17..471 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:04:49 Download gff for
BO30607.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43778-RC | 2027..2479 | 17..471 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:04:49 Download gff for
BO30607.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13307927..13308298 | 101..471 | 99 | <- | Minus |
| 2L | 13308410..13308493 | 17..100 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:29:39 Download gff for
BO30607.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13307927..13308298 | 101..471 | 99 | <- | Minus |
| arm_2L | 13308410..13308493 | 17..100 | 100 | | Minus |
BO30607.pep Sequence
Translation from 16 to 487
> BO30607.pep
MMVSKLWNSCFPEFTPDHVHRHNFYLCQWQRNTQVRIVYLFYRWITAITC
LAALVCSLLDIGRTDEHFEHHYAKWWIYLTHWGLLFCTVQAWLAAWIVTQ
GMMVEREDFEIVRQAKKSRLHHLYWVLYTCATVYAFIVTMCYWLLVHNPG
KASFLDH
BO30607.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:15:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG43778-PC | 663 | CG43778-PC | 513..663 | 1..151 | 866 | 100 | Plus |
| CG43778-PD | 451 | CG43778-PD | 1..149 | 1..149 | 855 | 100 | Plus |
| CG43778-PA | 963 | CG43778-PA | 513..661 | 1..149 | 855 | 100 | Plus |
| rost-PC | 275 | CG9552-PC | 28..148 | 22..147 | 165 | 30 | Plus |
| rost-PB | 275 | CG9552-PB | 28..148 | 22..147 | 165 | 30 | Plus |
