BO30612.complete Sequence
1300 bp assembled on 2011-12-14
GenBank Submission: KX795717
> BO30612.complete
GAAGTTATCAGTCGACATGTACGCCGGTCGGGCGACACAATTTGCCAAAA
CCATCAGCAGCATGGCGTGCAGCATACAGAAGCAACCTCAAGCTCCGCAA
TCAGTGGATCCTGGCACTGCAGCAGTGGATCGGGTGGGTGGAGGAGGCGG
TGGCCCCAGTGGAGCTGGCACCGTTCCCTCCACGCCGAAAGCCAAGACCG
CCCAGCCGAGGGGCTCCCTGCCAACGGACGTGAACCAGCCACCGTTGGAA
TTTCAGTGGCCACCGCCCGTTCCCGTTTCGATACACACGAGCAACTTGCG
TCTGAACATGATGAACCAGGATCCCAAGGACCTCCACACAGCCAGAGCCA
TTATCGAGGAGCTGCGCTCCAAGGTGCGCTTCCAGACGGAGCACATCATG
AAGTGGCGCAAAGCGTATGCCATGCAGGTCCAGCAACACTATCGTTACCA
GAAGGAGAAATCTGATCAGATGAACTCGTTGACCTCGCAGCTCTTGCTCT
TGGAATCCCGACTGAAGCGGAAGCAGAAGCAGATAGCCAGTCTATTGAAC
CATCGGGAGTTGACCATCCAGCGCCAGCAGAAGATCATCGACACCCTGTC
CTCCCGGCTGGTGGATCACGGGCTGGAGACCATTGAAGCTAGCTATGCCA
ACGAGCTGGACTCCCTGAACGACTCGGATTCGGCGGTGGTGCTGGAGGAC
ATTGACTCGGACAGCCCGATGACATTGGGCACGCGACGGAAGAGTAGTGG
CGCTGGCGGATTGGGCGGCGTGCTGGGCAGCGATGGCATCACCATAGTGC
GGTCCATATCCGATGCAATCGAGACGAATCACAACAAGTACGGAGCGGCC
AGGCGGAACAACTGCTTCCTGCGGCGTCCCGATATCCTGGAAACGGTATA
TTCGGTCGAGGAGGATCCCGAACCCACCACGGACGTGGCAGAGAAGCGGG
ACAAGTTCAAGAACCGCTCCGACAAGGCTCTCAGCTCCAGCTCGACGGAG
GGTCAGATAGACGCCGCCAGTCCCTCGACCGCAGACAAAGCCAAAGATTC
ATCGCCCGTCGACGGCGGATCCACCATTCCAAGACGCCAACTGGGAGCCC
TCAAAAGATCTCCCAGCCACGACTCTCCGTGCACCACACTCAGTGTCAAG
GTCCCCCAGCTGCAGCCACCATCTCCTACACCATCGACACAAGGAGTCCA
GGATCCGCCCAACGGAAAAACCCAGGATAATGTTGAGCCAATGGAGGGAA
TTCCCATATTCTTAGATTGCGAAATAGACTTAGCAAGCTTTCTAGACCAT
BO30612.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 07:55:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG43861-RB | 1269 | CG43861-PB | 1..1266 | 17..1282 | 6330 | 100 | Plus |
| CG43861-RD | 1413 | CG43861-PD | 1..1210 | 17..1226 | 6050 | 100 | Plus |
| CG43861-RC | 1707 | CG43861-PC | 1..1210 | 17..1226 | 6050 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 07:55:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG43861-RB | 2907 | CG43861-RB | 721..1986 | 17..1282 | 6330 | 100 | Plus |
| CG43861-RD | 3486 | CG4-RD | 721..1930 | 17..1226 | 6050 | 100 | Plus |
| CG43861-RC | 2686 | CG43861-RC | 721..1930 | 17..1226 | 6050 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 07:55:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 19970519..19971320 | 1226..425 | 4010 | 100 | Minus |
| 2L | 23513712 | 2L | 19971404..19971816 | 429..17 | 2065 | 100 | Minus |
| 2L | 23513712 | 2L | 19970405..19970464 | 1282..1223 | 300 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 07:55:11 has no hits.
BO30612.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-14 10:03:41 Download gff for
BO30612.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13966-RB | 721..1986 | 17..1284 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:30:01 Download gff for
BO30612.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43861-RB | 721..1986 | 17..1284 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:06:54 Download gff for
BO30612.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43861-RB | 721..1986 | 17..1284 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:06:54 Download gff for
BO30612.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 19970401..19970461 | 1226..1284 | 96 | <- | Minus |
| 2L | 19970520..19971317 | 428..1225 | 100 | <- | Minus |
| 2L | 19971406..19971816 | 17..427 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:30:01 Download gff for
BO30612.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 19970520..19971317 | 428..1225 | 100 | <- | Minus |
| arm_2L | 19970401..19970461 | 1226..1284 | 96 | <- | Minus |
| arm_2L | 19971406..19971816 | 17..427 | 100 | | Minus |
BO30612.pep Sequence
Translation from 16 to 1300
> BO30612.pep
MYAGRATQFAKTISSMACSIQKQPQAPQSVDPGTAAVDRVGGGGGGPSGA
GTVPSTPKAKTAQPRGSLPTDVNQPPLEFQWPPPVPVSIHTSNLRLNMMN
QDPKDLHTARAIIEELRSKVRFQTEHIMKWRKAYAMQVQQHYRYQKEKSD
QMNSLTSQLLLLESRLKRKQKQIASLLNHRELTIQRQQKIIDTLSSRLVD
HGLETIEASYANELDSLNDSDSAVVLEDIDSDSPMTLGTRRKSSGAGGLG
GVLGSDGITIVRSISDAIETNHNKYGAARRNNCFLRRPDILETVYSVEED
PEPTTDVAEKRDKFKNRSDKALSSSSTEGQIDAASPSTADKAKDSSPVDG
GSTIPRRQLGALKRSPSHDSPCTTLSVKVPQLQPPSPTPSTQGVQDPPNG
KTQDNVEPMEGIPIFLDCEIDLASFLDH
BO30612.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:38:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG43861-PB | 422 | CG43861-PB | 1..422 | 1..422 | 2170 | 100 | Plus |
| CG43861-PD | 470 | CG43861-PD | 1..403 | 1..403 | 2067 | 100 | Plus |
| CG43861-PA | 470 | CG43861-PA | 1..403 | 1..403 | 2067 | 100 | Plus |
| CG43861-PC | 568 | CG43861-PC | 1..403 | 1..403 | 2067 | 100 | Plus |
