Clone BO30623 Report

Search the DGRC for BO30623

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:306
Well:23
Vector:pDNR-Dual
Associated Gene/Transcriptird5-RB
Protein status:BO30623.pep: Imported from assembly
Sequenced Size:2227

Clone Sequence Records

BO30623.complete Sequence

2227 bp assembled on 2011-11-15

GenBank Submission: KX796756

> BO30623.complete
GAAGTTATCAGTCGACATGAGCTCCGTAAATAAAATAAAGCTTAACGAAA
ACAACAAGATGCACTCTTTTGGGAACTGGGAGCGGTGCCGGAATCTGGGA
GAGGGCGGATTCGGCCTAGTGATCCATTGGCGAAACCGAACAACGGGCCG
TGAAATTGCCACCAAGCACATAAAGGAGATGGGGGCCCTGAGTGCCGATC
AGCAAGTCAAGCTCAGCGAGCGTTGGAACAAGGAGCTGAACTGGTCTCGT
CAGTTTAAAAACTTTCCCCATATTGTGGCTGGCGTGGACATCGAGGATCC
GGACTTTTTGGAGTACCTGAATGGCATGTTTAGTGCCAAGTTGCCTGTTA
TTGTGCTGGAATACTGTAACGGTGGAGACGTGAGGAAGCGTCTGCAGAGC
CCGGAGAATGCTAATGGTCTGACGGAGTTCGAGGTGCGGCAGATACTGGG
AGCCCTACGTAAGGCCCTACATTTTCTGCACTCGCAGTGTGGGATTTGCC
ACCGCGATTTGAAGCCGGACAATATAGTAATCCAACGTGGAGTTGATGGC
AAAAAAATCTATAAGCTAACCGATTTTGGACTCGCCCGAGGAACTCCCGA
CCAGACCATGGTGCAGAGCGTGGTGGGCACCCGACATTACTATGCCCCAG
AAGTGGTGGAAAATGGTTTTTACAACTCGACCGTGGATTTATGGTCCTTC
GGAGTAATTGCCTATGAGCTGGTCACTGGTGAGCTGCCCTTCATCCCCCA
TCAAACCCTTAAAAACATTATACTCAATCTGATAAAAAAGCCCGCCAAAT
GCATTGCTATCACAGAGGATCCGGAGGATAACACTCGTTTCGTGAATCAG
TTTGAACTGCCACAGACGCACCATCTGTCGCGGCCCTGGGCTGCTCAGTT
CACCAAATGGCTGGCAAGCCCGTTAAACTCAAACTACAAGGAACGCGGTC
AACTAGCAGCTAATAACGTTCCAGTCGTCTTCGCTGACCTGGACAAAATA
CTCAATATGAATGTGCTAACTATTTTTGCTGTTAACAACTGCGAACGACT
TGAGTATGCGGTCTCTGCGGAGATGACTATGAAGGATCTAATTGCGTTGA
TTGTCCTGGACACTGGAATGGACGAAAAGGAACTGTACTTCGTGCTGCCC
ACTTCCCATCCGCACAAAACGATTACGCCTAAAAGTACGCCCTTGCAGCT
GTATGTGGAGGAGTGGAGTGACACAAGCAAAGATTCACGAAAGTGGACTA
AGCGCAGCAATCCACCTGTGATGTTGTACATCTTTCAGGTCAAGAAAGAG
TGTGACTACAAAATACCTGAACCCATTCTATCAATTCTTTCTCGAAAGTT
TATCGCTAACAAATTTAAGACGAAGGAAAGATGGCTGCAAAAACGTGTTG
TCTTGGATATGCTCTACGTGCTAACCAAAGAGCAAGCAAGATACGAAATG
CTCGTGTCAGGAATAAACGAGCGAGCGTTGTCGTTGGAAGACGAAATGAT
GGAAAACTCGTTTATAGACAGCATCGATAAGCAGCGTATCATAATCTCCT
TTGCCTATGATCAGCTAACAAGCTTGCTAAAAGAAGCCCAAGCAAAGATT
CCGTCCCGCCAGCTTATCAGCAGTGCACAGTGGGAGAAGCTTAACCGCAA
TTATAATTTCATTATACAAAGCGCAAAATCAATTAGGTCTTTCTTGGAAG
CCTGCTTGCGGGAAGCCAAGGACATGGTTAAAACCACCAATCAACTACGG
AAAGAAGTTTGCGAGAAAGACCTATTCGATTGCGCTCGATTTTATAAGAA
ATATCTCTGCAATGGTGCGATAATTTCGCCATCAGAGTTAAATAATGACG
CCGAGGAATTCGCAAAATCTCGTTTCAAGTTATATAACGAGGGCGAGGCT
AGACATCTGCCCAAGTCTATCGATCACATGCATTACTTATATTTTAAGAC
CAAGGAGTCCATCCCGGTCCTTCTACAACAATTTTGCGACATCAAGAAGG
AGATATTTCAGATTAACTTGCAGATGTTGATGTCAGCCTCAAGCACACCA
CCTCCGAAGCTTGAGCTAAGCGCAGCGATGGACCGCCTAGCTATAAGCTC
TGGCTCACCCAGCTCGGATCCATTTGACTCTCTACGCACGATAAACGCTA
TCGAAGAGGCAGAAAGGATTAACAACATACTTGTTAATGAAATGAAAATT
GATCACTATGCAAGCTTTCTAGACCAT

BO30623.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 07:50:49
Subject Length Description Subject Range Query Range Score Percent Strand
ird5-RB 2154 CG4201-PB 1..2151 59..2209 10755 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 07:50:51
Subject Length Description Subject Range Query Range Score Percent Strand
ird5-RB 2488 CG4201-RB 60..2252 17..2209 10965 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 07:50:46
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 16047358..16048812 1612..158 7275 100 Minus
3R 32079331 3R 16046669..16047065 2178..1782 1985 100 Minus
3R 32079331 3R 16047133..16047306 1782..1609 870 100 Minus
3R 32079331 3R 16049221..16049362 158..17 710 100 Minus
Blast to na_te.dros performed on 2014-11-28 07:50:47 has no hits.

BO30623.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 13:53:13 Download gff for BO30623.complete
Subject Subject Range Query Range Percent Splice Strand
ird5-RB 61..2253 17..2211 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:29:37 Download gff for BO30623.complete
Subject Subject Range Query Range Percent Splice Strand
ird5-RB 60..2252 17..2211 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:05:07 Download gff for BO30623.complete
Subject Subject Range Query Range Percent Splice Strand
ird5-RB 60..2252 17..2211 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:05:07 Download gff for BO30623.complete
Subject Subject Range Query Range Percent Splice Strand
3R 16047133..16047302 1613..1782 100 <- Minus
3R 16046581..16046613 2179..2211 93 <- Minus
3R 16046669..16047064 1783..2178 100 <- Minus
3R 16047358..16048811 159..1612 100 <- Minus
3R 16049221..16049362 17..158 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:29:37 Download gff for BO30623.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11872303..11872335 2179..2211 93 <- Minus
arm_3R 11872391..11872786 1783..2178 100 <- Minus
arm_3R 11872855..11873024 1613..1782 100 <- Minus
arm_3R 11873080..11874533 159..1612 100 <- Minus
arm_3R 11874943..11875084 17..158 100   Minus

BO30623.pep Sequence

Translation from 16 to 2227

> BO30623.pep
MSSVNKIKLNENNKMHSFGNWERCRNLGEGGFGLVIHWRNRTTGREIATK
HIKEMGALSADQQVKLSERWNKELNWSRQFKNFPHIVAGVDIEDPDFLEY
LNGMFSAKLPVIVLEYCNGGDVRKRLQSPENANGLTEFEVRQILGALRKA
LHFLHSQCGICHRDLKPDNIVIQRGVDGKKIYKLTDFGLARGTPDQTMVQ
SVVGTRHYYAPEVVENGFYNSTVDLWSFGVIAYELVTGELPFIPHQTLKN
IILNLIKKPAKCIAITEDPEDNTRFVNQFELPQTHHLSRPWAAQFTKWLA
SPLNSNYKERGQLAANNVPVVFADLDKILNMNVLTIFAVNNCERLEYAVS
AEMTMKDLIALIVLDTGMDEKELYFVLPTSHPHKTITPKSTPLQLYVEEW
SDTSKDSRKWTKRSNPPVMLYIFQVKKECDYKIPEPILSILSRKFIANKF
KTKERWLQKRVVLDMLYVLTKEQARYEMLVSGINERALSLEDEMMENSFI
DSIDKQRIIISFAYDQLTSLLKEAQAKIPSRQLISSAQWEKLNRNYNFII
QSAKSIRSFLEACLREAKDMVKTTNQLRKEVCEKDLFDCARFYKKYLCNG
AIISPSELNNDAEEFAKSRFKLYNEGEARHLPKSIDHMHYLYFKTKESIP
VLLQQFCDIKKEIFQINLQMLMSASSTPPPKLELSAAMDRLAISSGSPSS
DPFDSLRTINAIEEAERINNILVNEMKIDHYASFLDH

BO30623.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:38:46
Subject Length Description Subject Range Query Range Score Percent Strand
ird5-PB 717 CG4201-PB 1..717 15..731 3743 100 Plus
ik2-PC 720 CG2615-PC 12..369 21..390 324 28.9 Plus
ik2-PB 720 CG2615-PB 12..369 21..390 324 28.9 Plus
Pak-PJ 704 CG10295-PJ 430..635 21..253 251 31.6 Plus
Pak-PE 704 CG10295-PE 430..635 21..253 251 31.6 Plus