BO30624.complete Sequence
1606 bp assembled on 2013-11-20
GenBank Submission: KX796533
> BO30624.complete
GAAGTTATCAGTCGACATGCTTGGCGGCGGCAGCGGGGAGCGTCTGTGCA
CGCCAAGCACTTCGGCCGGCCCATTCCGCATCTTTTCCGTGGCCGGATTC
CAGAACCGGGCCAATGACATCGTCTACTGCCCGCCGATCGTGCGCCAGCA
CTCGGTGCACGTGCCGGAGGACTCCACGGCCATAATCTATTTTGGTGGGG
ACGTGCAGGACTTCCCGGAGAGCATGGAGACGAACCGTGACAGTCGGGGC
TACATGAAGTACAACCTCGAAAACTCGGCCATCCTTCTGCGCGAGGCCTT
TCCCCGGTCACACATCATCGTCATCCGGCCCGTGCGCATGGAGTTCAAGA
CATTCAGTTGCTTTGACAATTTTGTTCGGGGCAACAACGCTGGAGTTCCG
GATCACACGCCCATGAACCATGCCCTCCAGCATCTAGAAAAACTGCTTCA
GAATCTATCGCAGCGCCTGATCTCCATACCAGAGAACGAAATTCTGGATC
AGGCCGCCCAGGCAGCGGCTGCTGCGGCGGCAGTGGCTGCTGCTGCTGCG
GCCGCAGCTTTAACGCTATCCAACGCCACGGTCACCTCGGAGTCCAACTC
ACAATCGGCACCGGCCAACGACAGCAGCCAGGAGATGGACATTGATATAT
TGCAGGTGCAGGAGAATATCACAGTGGACGCGGATGGGGCAGTAATATTT
CCGATAGTTGGCAACGAAGTGCCAGAGGCAGTGAACAATGTATCCGGGAA
TAATGGCAACATCGGTGGTGGCGGTAACGATGATAGTGTAAACAACCACC
AAGAGCAAGTGAACAACCAGCAGCTCCAGCAGCAGCAGCAAACGGCGGCA
GCCATCAAGATGACTTCTCCCACAACGGCGATAAATGCCACCAACAATGT
GGAGCACTACAACAACGATTGTGGTACGAGGCAGGCTTCCGCTGCCTCTG
CAACAACAGCCTCGGCAACGGGCACCTCCACATCAACGGCAAGCAGCGAT
AGCAATCCGCTGTGGTGGCGGGAGAACCTCAATCTGGACAAATCCAAGCT
GGTGCTGATTGGCTTTAGCAAGGGCTGCGTCGTGCTCAATCAATTCATCT
ACGAGTTCCACTATCTTAAGACGCTCACGCCCGACGACAGCAGCATGTGC
CGCCTTCTCTCCCGGATTTCAGACATGTACTGGCTGGATGGCGGCCATGG
GGGCCAAAAGAACACTTGGATCACGTCCCGTAGCTTGCTGGAAACACTAA
CGCGGATGGGCATGAACATCCATGTCCACCTGACGCCCTACCAGGTGCAG
GATGATCGCCGACCCTGGATTAGAAAGGAGGAGAAGTTGTTTACGGAGAT
GCTACGTAGGCTGAATGCGCCGATCACCCGGCACTTGCACTACGACAACC
AGCCAGCGAATCTGATGACCCACTTCGAGGTGCTGCAGGCATTTTGCCAG
CACGTCCACGCGCTCAACCAGCAGCAACAGCAAATGCAGCAGCAGCAGGG
TGTCGGCATCAGTGAGCAGTCTTCGGCGGCGGTGGCCGCCACCAACAATG
GGAGCAACAATCTATTGGAAGCCGGCGAGGAGGCAAAGGCAAGCTTTCTA
GACCAT
BO30624.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:35:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31122-RB | 1575 | CG31122-PB | 1..1572 | 17..1588 | 7860 | 100 | Plus |
| CG31122-RA | 1929 | CG31122-PA | 1..1567 | 17..1583 | 7835 | 100 | Plus |
| CG31122-RC | 1578 | CG31122-PC | 1..1575 | 17..1588 | 7795 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:35:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31122-RB | 2993 | CG31122-RB | 167..1739 | 16..1588 | 7865 | 100 | Plus |
| CG31122-RA | 2930 | CG31122-RA | 167..1734 | 16..1583 | 7840 | 100 | Plus |
| CG31122-RC | 3439 | CG31122-RC | 43..1618 | 16..1588 | 7800 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:35:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 18408619..18409270 | 1093..442 | 3260 | 100 | Minus |
| 3R | 32079331 | 3R | 18407885..18408214 | 1588..1259 | 1650 | 100 | Minus |
| 3R | 32079331 | 3R | 18409498..18409818 | 336..16 | 1605 | 100 | Minus |
| 3R | 32079331 | 3R | 18408274..18408440 | 1260..1094 | 835 | 100 | Minus |
| 3R | 32079331 | 3R | 18409332..18409437 | 441..336 | 530 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 14:35:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2249..2519 | 731..1005 | 230 | 60.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2804..3023 | 792..1020 | 148 | 58.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2374..2493 | 795..916 | 147 | 60.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6921 | 816..1004 | 142 | 59.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6707..6923 | 782..990 | 139 | 57.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2593..2822 | 788..1005 | 138 | 58.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6727..6919 | 711..897 | 138 | 57.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2830..2876 | 559..513 | 127 | 74.5 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6771..6820 | 791..841 | 126 | 74.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2346..2385 | 554..515 | 119 | 77.5 | Minus |
BO30624.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-11-20 11:24:18 Download gff for
BO30624.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31122-RB | 168..1739 | 17..1590 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:17:38 Download gff for
BO30624.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31122-RB | 168..1739 | 17..1590 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:17:38 Download gff for
BO30624.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 18407881..18408213 | 1260..1590 | 99 | <- | Minus |
| 3R | 18408275..18408440 | 1094..1259 | 100 | <- | Minus |
| 3R | 18408619..18409270 | 442..1093 | 100 | <- | Minus |
| 3R | 18409332..18409436 | 337..441 | 100 | <- | Minus |
| 3R | 18409498..18409817 | 17..336 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-11-20 11:24:18 Download gff for
BO30624.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 14233603..14233935 | 1260..1590 | 99 | <- | Minus |
| arm_3R | 14233997..14234162 | 1094..1259 | 100 | <- | Minus |
| arm_3R | 14234341..14234992 | 442..1093 | 100 | <- | Minus |
| arm_3R | 14235054..14235158 | 337..441 | 100 | <- | Minus |
| arm_3R | 14235220..14235539 | 17..336 | 100 | | Minus |
BO30624.pep Sequence
Translation from 16 to 1606
> BO30624.pep
MLGGGSGERLCTPSTSAGPFRIFSVAGFQNRANDIVYCPPIVRQHSVHVP
EDSTAIIYFGGDVQDFPESMETNRDSRGYMKYNLENSAILLREAFPRSHI
IVIRPVRMEFKTFSCFDNFVRGNNAGVPDHTPMNHALQHLEKLLQNLSQR
LISIPENEILDQAAQAAAAAAAVAAAAAAAALTLSNATVTSESNSQSAPA
NDSSQEMDIDILQVQENITVDADGAVIFPIVGNEVPEAVNNVSGNNGNIG
GGGNDDSVNNHQEQVNNQQLQQQQQTAAAIKMTSPTTAINATNNVEHYNN
DCGTRQASAASATTASATGTSTSTASSDSNPLWWRENLNLDKSKLVLIGF
SKGCVVLNQFIYEFHYLKTLTPDDSSMCRLLSRISDMYWLDGGHGGQKNT
WITSRSLLETLTRMGMNIHVHLTPYQVQDDRRPWIRKEEKLFTEMLRRLN
APITRHLHYDNQPANLMTHFEVLQAFCQHVHALNQQQQQMQQQQGVGISE
QSSAAVAATNNGSNNLLEAGEEAKASFLDH
BO30624.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:46:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31122-PB | 524 | CG31122-PB | 1..524 | 1..524 | 2715 | 100 | Plus |
| CG31122-PA | 642 | CG31122-PA | 1..526 | 1..526 | 2710 | 99.4 | Plus |
| CG31122-PC | 525 | CG31122-PC | 1..525 | 1..524 | 2703 | 99.8 | Plus |
