BO30654.complete Sequence
4408 bp assembled on 2011-11-09
GenBank Submission: KX798079
> BO30654.complete
GAAGTTATCAGTCGACATGATTGTGTGGGGTGAGCCCCAGCGAGATGTAA
CTTATCCGGTGCACGCCACTTCGCAAGCGACGGCACTATGCTGGCATCCG
GAGAAGGCGCTCCTGGCCAGCGGTTGGGAGCACGGCGACATCCATGTGTG
GTTCGCTGGTCACAGGGAGTTTGCCAGCGTGAACGCACCGCACAAGGCGG
CCATCGTCCTGCTGCAGTTCAGCGAGCAGGGCGGGCGGATGGTCACGGCG
GATGCCATGGGCTTGGTCACCGGATGGCGCTGCGATGGCCAGTACCAGTT
CCTAACCATGTTCTCCCACGACCTGCGGGAGGTGTTGCTGCTGATCTGCT
TCCGCCTTACGGTGGAGAGTGAGGTGCGCGAGGAGATGGCCAATCTAGCC
AAGGCTGCTGTGGCAGGCGATGAGAACGCCCTGGACACCCTAACCAATTG
GAGACCGCGCACAGCAGCCCGGAGCATGACCCATTCGGGGGTGCGGGACA
ACCACTGCTTCTACGCTTGCACCCAAGGAGGAGTGGTGTACTACATCAAC
CAAGGAGGCGCCTGTGTCGAGGTGATGAAGTGCGGATCACTGCCTCCCAT
TGTCCAGATGTTGTGGCACCCAAGAAAGGACGCCGTCATTTGCCTGATGG
AGGACTTGACAGTCACCTTGTTTTTGGTTGAATCCACAGGCATCCTTACG
GAGCTGGATCGTGTTAAAATGAGCGGACGTGGAGGCGGTCGGCAGGGAGG
CATCGCGTGGTCTGGAAACTCTTTAGCCATCATAACAGGCGATTTTTTCG
TCCGCATTTGGGACATCGAGAGAAGCGACAATTACCTATTGAAAATGGAC
CTACCCAGTGGCAACCAGCCAGGCTCATCTATGACCACTTTAAGTAATGG
CACCATGTCCTCGTCCAACCAATTCTTTAGCCATGACAGCAGCGAAAGCA
GCGGCGTTCTCCGCAAGACACCAAAGTACGGCCAGCTGAACGGCGAAATG
TTCACCTGCTTGGCATATAGCTCTACGGGACAGACTCTGTGTGCAGGAAC
GTCCCAGGGGAATGTCTATACTTGGAAGAGGAGCGGCAGCAGGCTAGTCG
GTGCCCCCGAAGATGCCTGGCAGCTGACGAACATATCTTCCGTGCGAGGA
GCCATCCGCAGCTGCGAATGGGGATACAATGAGCTAGCCAAGCCCTGCAT
GCTGGTCAACTGCCTTTCCAATGTTTTCATGCTGAAGGAGCAACCTCTGC
TCGCCGTTCATACCCGCGAACTGTGGGCAGTTCAGAGGTCAGCCAAATCA
GTGCAATTGACGCACTGCAGCGGTCGGGAGGCCATTGTTCAGTCCGAGTT
CGCCGTGACTGCCATGGCTTTGAGTGAACTGAGCTTGGTGATGAGTAATG
GCAGGAGCATATCATCCTATAGCCTGCAGAAAGTGGAGAAGAGCTTGGAT
GAGTTCGAGGAGATCCTGCAGACAGTGGAGGGCACAACACCGACGACGGA
ATCTACCACCACTCCGTTGAGTCTGAAACTCCTGCAGACCTTTGCTGCCG
AATGCTTAGCCTTGAATCTGTGCAACCAGAACATATTTTGCTTGGGTAGC
AGTGACGTTTTTGTTTACTCCGTGGGAGGGGTAGTGCTTCACCGCATTCA
AGCAAGCGATATTGAAGGAAAGATCATTGGAATGGATTTGAGTGGCTGCT
ATCTCTCGGTATTTACCATGAATGGATATGTGAAAGCTTACGACGTTTCT
AGGCACGATCCCAAGCTGCTCTTTCCCAGCAAATCGGGTCACGACATTTT
CGATGACTTCGGGGAGTTCATTCTGGTCAAGTGCAATAGCTCCGGCAGCC
ACTTGGCCATGGTGATAGCCAGTAGCAATTTCACCCCTATATCCACTTTA
TTCTGCTGGGACTTTGAGCGCAGCAATCTTCTTGAATATGGACTACTGGA
GCCAGAAACCAACGCCAAGAAGGAGTCTTCGACAAGTTTGCCGGTTCGGA
TTTTCTGGGATGCAGAGGAACCTCGTCTCTTGGCTACAGAAGTCAAGTCC
ATGATTCAGAAGACCCTGCCCCAGAAGAACTCCTTGCAACCCAGTCATTT
TGTGCAGTCAAAAGTCGTCCTTTTGTTTTATTCCGAGAAAGGCTGCCTGA
ATGTCCTCGAAACACAATCCATGAGCCCAGGCTGCCAGCTACTGAACCTT
TGTGTACCCAACGTGATCCGGCTGAAGATCAATACGATGGAGGAGCAACC
TCTGCAAGACTTCGTCGACCTACAGCAGTGCAATCCAGTTACGAGGAAGC
AAGTCCTGAATTTCAGTCTCTACGTCGCAGAGGGAAATATGGATATGGCT
TATCGCAGCATTCGCTCGATTCAATCGAAAGTGATCTGGACAAATCTGGC
TAAGATGTGCGTGCACACGAATCGCTTGGACGTGGCCAAGGTGTGCATGG
GCCACTTGGAACAGGCCCGCTCCGTTCGTGCCTTACGCCAAGCGATTGAA
GATGACGATCTGGAGACGGAAGCCAAGGTGGCTGTGCTGGCGATAGAACT
CGGAATGATTGAGGAAGCCAAGGATCTTTATCGTCGATGCAAGCGCTTCG
ATTTGCTAAACAAGCTGCTCCAGTCCATTGGGCACTTGGATGAAGCAGTA
GAGCTGGCCGAGGCCGAGGATCGGATTCATCTGAAGCACACGTACTATCA
AAAGGCACAGGAGCTGCGAGAGAGGGGTGACATCAAGGGAGCTCTGGAGT
ACTTTGAAAAGACCCAGAATCCAGCGCAAAATATTACCCAACTGCTTTTG
GAAAACCCTGGCGCCATGAAGCGCTACATCCAGACCACCAGCGATCCCAA
GCTGCTTAAATGGTGGGGCCAGTATATTGAGAGCTCCGGCGACATGGATG
CTGCTCTGGCTGTCTACCACAAGGCGGAGGACTGGTTCTCGCAGGTAAAG
ATACTCTGCTACCTAGGTAAGATCTCCAAGGCAGACGCGATTGCCAGGCA
GTCGGGGGATCGGGCGGCCTGCTATCACTTGGCGAGGCATTACGAGAACG
TGGGCAAGTTCCAGGAGGCCATTATGTTCTTTACGCGTGCCCAGACCTTC
AGCAATGCGATCCGCATCTGCAAGGAGAACGACTTTCAGGAGGAACTATG
GACGGTGGCCAGCTCGTCAAGGCAGAGGGACAAGGCAATTGCGGCAGCTT
ACTTTGAAGAGTGCGGAAACTTTAAACACGCCGTTGAACTCTACCATCGG
GCCGGGATGCTCCACAAGGCCCTCGAGATGGCATTTGAGTCTCAGCAGCC
AGAGATCCTGGAAATTATTGCCTCTGATCTAGCGCCCGATTCGGATGCCG
AGTTGATTAACCGCTGTGCGGATTTCTTTTGCAGTATCGAGCAATTTCAG
AAGGCCGTGCATCTGCTGGCCAAGACCAGACATTTGGAACGGGCATTGGG
CATATGTTCCGAGAAGGGCGTACCCGTCACGGAGGAACTATCCGAGATGC
TTACTCCGGAGAAGGGGGAGTTCGAGGAGGCGACTCGAGTCCACATCCTC
GTACAGCTGGGCGAGTTCCTCCAGCAGCAGGGCGACTATCACAGTGCCAC
CAAGAAGTTCACCCAGGCTGGCGACAAAATTCGCGCCATGAAGAGTCTTT
TGAAGTCGGGCAACACCGACAAAATTATTTTCTTCGCTAATATGTCGAGG
CAACGTGAGGTCTACATCATGGCTGCGAACTATCTTCAAGCCTTGGACTG
GCAATCGGATCCGCAAGTGCTCAAGCACATAGTCACGTTTTATACAAAGG
GCCAGGCCTTTGATTCGCTGGCCAACTTTTATGCCATCTGCGCCCAGATC
GAAATCGAGGAGTTCCAGGATTACGGTAAGGCTCTAACCGCCATGCAGGA
AGCCTCCAAATGCCTGGAGAAGCTCAGCCACGCCCAGCACGTCTACAACA
ATCTGCAGCGCACGGTCGCGGATGTTAAGGCAATTCTGGAGATCCAGCAG
GCGTTGCGCGAGGGGGATCACCAGCTGGTCATTGGCTCCTGCCGCAGCAT
GCTGATTAAACCCGAACTGCCGCCCATACGCCACGCCCATATCTTGGCCA
TGCTAATCCGAGCCCTGGTCTACGTCAAGGACTATTCTGAGGCGGGCAGA
GCTTTGAAGGAGCTGACCGTGAAGGACAGCACGTGGAGTGCCTCGGGACT
CTTGGATCGCAGCATCGTTCACAAAATTGCGCAGGAGTGCCACTTGGAGT
TCGATCTCATCTGGAATGCGGGACGCCAGGTGACCGCCTCCACAAGCGGT
ACGGCCGCCACTGGAATGAGCAGCACTTCTGGGATGACGACTACTGATGA
TGACGACGCCGATGACGAGGAGATCACCGAGGAGCTGCATGCAAGCTTTC
TAGACCAT
BO30654.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 07:40:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| rempA-RC | 4377 | CG11838-PC | 1..4374 | 17..4390 | 21870 | 100 | Plus |
| rempA-RB | 4512 | CG11838-PB | 148..4509 | 29..4390 | 21810 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 07:40:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| rempA-RC | 5308 | CG11838-RC | 737..5110 | 17..4390 | 21870 | 100 | Plus |
| rempA-RB | 5024 | CG11838-RB | 465..4826 | 29..4390 | 21810 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 07:40:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 555505..557668 | 2949..786 | 10820 | 100 | Minus |
| 2L | 23513712 | 2L | 554332..555448 | 4059..2943 | 5570 | 99.9 | Minus |
| 2L | 23513712 | 2L | 557942..558542 | 628..28 | 3005 | 100 | Minus |
| 2L | 23513712 | 2L | 553940..554274 | 4390..4056 | 1675 | 100 | Minus |
| 2L | 23513712 | 2L | 557721..557882 | 789..628 | 810 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 07:40:32 has no hits.
BO30654.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-09 10:40:46 Download gff for
BO30654.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rempA-RC | 737..5110 | 17..4392 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:28:38 Download gff for
BO30654.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rempA-RC | 737..5110 | 17..4392 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:01:31 Download gff for
BO30654.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rempA-RC | 737..5110 | 17..4392 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:01:31 Download gff for
BO30654.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 553938..554274 | 4056..4392 | 99 | <- | Minus |
| 2L | 554336..555446 | 2945..4055 | 100 | <- | Minus |
| 2L | 555510..557665 | 789..2944 | 100 | <- | Minus |
| 2L | 557722..557882 | 628..788 | 100 | <- | Minus |
| 2L | 557943..558546 | 24..627 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:28:38 Download gff for
BO30654.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 553938..554274 | 4056..4392 | 99 | <- | Minus |
| arm_2L | 554336..555446 | 2945..4055 | 100 | <- | Minus |
| arm_2L | 555510..557665 | 789..2944 | 100 | <- | Minus |
| arm_2L | 557722..557882 | 628..788 | 100 | <- | Minus |
| arm_2L | 557943..558546 | 24..627 | 99 | | Minus |
BO30654.pep Sequence
Translation from 16 to 4408
> BO30654.pep
MIVWGEPQRDVTYPVHATSQATALCWHPEKALLASGWEHGDIHVWFAGHR
EFASVNAPHKAAIVLLQFSEQGGRMVTADAMGLVTGWRCDGQYQFLTMFS
HDLREVLLLICFRLTVESEVREEMANLAKAAVAGDENALDTLTNWRPRTA
ARSMTHSGVRDNHCFYACTQGGVVYYINQGGACVEVMKCGSLPPIVQMLW
HPRKDAVICLMEDLTVTLFLVESTGILTELDRVKMSGRGGGRQGGIAWSG
NSLAIITGDFFVRIWDIERSDNYLLKMDLPSGNQPGSSMTTLSNGTMSSS
NQFFSHDSSESSGVLRKTPKYGQLNGEMFTCLAYSSTGQTLCAGTSQGNV
YTWKRSGSRLVGAPEDAWQLTNISSVRGAIRSCEWGYNELAKPCMLVNCL
SNVFMLKEQPLLAVHTRELWAVQRSAKSVQLTHCSGREAIVQSEFAVTAM
ALSELSLVMSNGRSISSYSLQKVEKSLDEFEEILQTVEGTTPTTESTTTP
LSLKLLQTFAAECLALNLCNQNIFCLGSSDVFVYSVGGVVLHRIQASDIE
GKIIGMDLSGCYLSVFTMNGYVKAYDVSRHDPKLLFPSKSGHDIFDDFGE
FILVKCNSSGSHLAMVIASSNFTPISTLFCWDFERSNLLEYGLLEPETNA
KKESSTSLPVRIFWDAEEPRLLATEVKSMIQKTLPQKNSLQPSHFVQSKV
VLLFYSEKGCLNVLETQSMSPGCQLLNLCVPNVIRLKINTMEEQPLQDFV
DLQQCNPVTRKQVLNFSLYVAEGNMDMAYRSIRSIQSKVIWTNLAKMCVH
TNRLDVAKVCMGHLEQARSVRALRQAIEDDDLETEAKVAVLAIELGMIEE
AKDLYRRCKRFDLLNKLLQSIGHLDEAVELAEAEDRIHLKHTYYQKAQEL
RERGDIKGALEYFEKTQNPAQNITQLLLENPGAMKRYIQTTSDPKLLKWW
GQYIESSGDMDAALAVYHKAEDWFSQVKILCYLGKISKADAIARQSGDRA
ACYHLARHYENVGKFQEAIMFFTRAQTFSNAIRICKENDFQEELWTVASS
SRQRDKAIAAAYFEECGNFKHAVELYHRAGMLHKALEMAFESQQPEILEI
IASDLAPDSDAELINRCADFFCSIEQFQKAVHLLAKTRHLERALGICSEK
GVPVTEELSEMLTPEKGEFEEATRVHILVQLGEFLQQQGDYHSATKKFTQ
AGDKIRAMKSLLKSGNTDKIIFFANMSRQREVYIMAANYLQALDWQSDPQ
VLKHIVTFYTKGQAFDSLANFYAICAQIEIEEFQDYGKALTAMQEASKCL
EKLSHAQHVYNNLQRTVADVKAILEIQQALREGDHQLVIGSCRSMLIKPE
LPPIRHAHILAMLIRALVYVKDYSEAGRALKELTVKDSTWSASGLLDRSI
VHKIAQECHLEFDLIWNAGRQVTASTSGTAATGMSSTSGMTTTDDDDADD
EEITEELHASFLDH
BO30654.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:37:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| rempA-PC | 1458 | CG11838-PC | 1..1458 | 1..1458 | 7568 | 100 | Plus |
| rempA-PB | 1503 | CG11838-PB | 50..1503 | 5..1458 | 7544 | 100 | Plus |
| Oseg2-PB | 1754 | CG13809-PB | 594..1068 | 763..1215 | 165 | 22 | Plus |
