BO30655.complete Sequence
3766 bp assembled on 2012-10-18
GenBank Submission: KX795268
> BO30655.complete
GAAGTTATCAGTCGACATGGCCACATTGGGCCTGTCAAAAGTCTTCATAC
TGGATAAATACTTTACCGAATTGCAAAAATTTTGGGAGACGGAGAAGAAG
CTGCAGGATGCATCTTCATCCAACGAGGCAGTTCATCTGCAGCAGCGGCT
CAAAAGCCTGAGCACCGAATTGGTGACTCTGCGAAACCGCCTGCATGTGG
GTCATGGACCGGGTCAGGGTCAGAGCCAGGGAAATGGCGCGCAGCCCGTC
GCCCCAGCTCCCAATGCGGGTCCCAAGGCCAACAACTTTGACCTAAACGC
ATCCAGTCCGAATCTCAATCTGAGTTCCAGCGGCGCAGGACTTTCAGCCA
GTGCAGTTCAGCAACACACCAATGGACATCACACGACATCGAAGAATCAC
AGCTTCAGCCACACATTGCCCGCAAACTCGGGCTCTGGTGGAGGAGGAGG
CGCTGGAGGAGGCGCCGTTGTGTCGGCGAGGAACACGTCGATTCCACATC
CACTTCCGCATCAGTTGGCCGAGAAGCCGGGCCTGTCGCATCAGCAGAGT
GGCAGCGGACATGGTCAGTCCACCGGGACACTGCCACATATGAGCGGCAT
GGGAAGTATCCTGGGGCAAAATTCCCATTCCCATGCACCGGTCAACAACA
ACAGCAACAACTCCAACACGCTGCCCATGCGCACCTCCAACTCCGGACAC
CTGGGCATCAATGGCGGAGGCGTTGGCCACCATCTCAGCCACGCCCACAG
CCAGCAATTGCCATTCATCCCGCAGTCGAAGCACACGAATCCCTGCCAGA
GTGTGAAGACTCTGCCCTTTGGATTCGGATTCTCCGAAAGTCAGCAGAAG
ATGCAACAGCAGCAGCAACAGGGCAACTCCTCGCCCAAGGACATGCAGGA
TCTGATCCACTTGTCGGGACCGCTCACCGAACATGCCGTGATGCGAACGC
TCCAGGCCCGATTCAACGAGCGGCGGTACTTTACGAACGTGGGTCCAATC
TTGCTCTCCATCAATCCGTACCTGGACGTGGGCAACCCGCTGACCCTCAC
CTCCACCCGCGCCATGCCGCTGGCCCCGCAGCTGCAGAAGATCGTCCAGG
AGGCAGTGCGTCAGCAGAGCGAGACGGGCTATCCGCAGGCCATCATTCTC
TCGGGAACATCGGGCGCTGGAAAGACGGCCAATGCGATGCTGATGCTGCG
CCAGCTCTTCGCCATCGCCGGCGGAGGTCCAGAGACTGATGCCTTCAAGC
ACCTGGCAGCTGCATTCACAGTACTTCGATCCCTGGGATCCGCCAAAACT
ACGACCAACTCGGAGTCCAGTCGCATTGGCCAGTTCATCGAGGTGCAGGT
CACGGATGGGGCACTCTACCGCACCAAGATACACTGCTACTTCCTGGACC
AGACTCGCGTCATTCGTCCACTGCCGAAGGAGAAGAACTATCACATCTTC
TATCAATTACTGGCTGGTCTCAGCCGGGAGGAGCGCCAGAAGCTACACCT
GGATGGCTACTCGCCGGCCAATCTGCGCTACCTGCGAGGTGACATTGGCC
AGAATGAGCAGGAGGATGCGGCGCGCTTTCAGGCATGGAAGACCTGCCTC
GGCATCCTGGGCATCCCATTCCTGGACGTCGTTCGTGTCCTGGCCGCCGT
TTTGCTGCTGGGAAATGTTCAGTTTATTGATGGAGGGGGTCTCGAGGTGG
ATGTGAAGGGTGAAACGGAGCTGAACTCTGTGGCCAGTCTACTTGGCGTT
CCGCCGGCGGCCCTCTTCCGTGGATTGACCACCCGTACCCACAACGTTCG
TGGCCAGCTGGTGAAGTCCGTGTGCGGCGATGGCGATGCCAATATGACGC
GGGACTGCCTGGCAAAGGCGCTCTACTGCCGCACGGTGGCCACTATTGTG
CGGCGGGCCAACAGCCTGAAGCGCCTGGGATCCACGTTGGGCACCCTCAG
CTCGGACTCAAACGAATCGGTGCACAACCAGGCGGATGTCGCCTCTCAGC
ACGCCTCCACCATTGGCGGTGGCAATGCGGGCTCCAAGTCGATGGCGGCA
CTCAATAATGCAGTGCGCCATGCCACCTCCGATGGCTTCATTGGAATCCT
GGACATGTTCGGTTTCGAGGAGCCCTCGCCACATGCCCATCTGGAGCACT
TGTGCATCAACCTGTGCGCCGAGACCATGCAGCACTTCTACAACACGCAC
ATCTTCAAGTCCTCCGTGGAATCCTGTCGCGACGAGGGCATCGTTTGCGA
CACCGAGGTGGACTATGTGGACAATGTGCCCTGCATCGATCTGATATCCT
CGCTGCGAACCGGTCTGCTCAGCATGCTGGATGCAGAGTGTTCGGTTAGG
GGCACTGCCGAGAGTTATGTGACCAAGTTGAAGGTGCAGCATCGCAGCTC
CACTCGCTTGGAGACGAAACCCACAGCCGAACCACACGATCCACGCATGT
TTCTCATCCGTCACTTTGCCGGTCGGGTGGAGTACGATACCACGGACTTT
CTGGACACCAACCGTGATGTGGTGCCCGACGATCTGGTGGGTGTCTTCTA
CAAGCACACCTGCAACTTTGGCTTCGCCACCCATCTCTTTGGATCCGAGC
TGAAAGCCCTGTATGCTCAGCAACAGGCTCCAAGGGGTCTGAGCTTCCGG
ATCTCGCCCACATCACACTCGGATCTGCTGAACGGGGACGAGCCGGTGTC
CACGCTGACCCAAGACTTCCACACCAGGCTAGACAATTTGCTGAGAACCC
TGGTGCACGCCAGGCCGCACTTTGTGCGCTGCATCCGAAGCAATGGAACC
GAGGCGGCTCGCAGCTTTGATAGGGCTACGGTGGTGCGCCAGATTAGATC
CCTGCAGGTCCTGGAGACGGTCAATCTAATGGCCAGTGGGTTCCCGCATC
GCATGCGCTTTAAGCAGTTCAATGCCCGCTACCGTATGCTAGCCCCATTC
CGCCTCTTGCGCCGCAGCGAGGACAAGGCTCTGGAGGATTGCCAGTTGAT
TCTGAAGTACGCAATGGAGCAGCCGCCAGTGCTGGATGGCTCGGTGACCC
TGGCCTGGGCACCTGGCAAGCGTCATGTCTTCCTTAGCGAGGGCATTCGC
CAGCACTTGGAGCACTTGCGCACCGAGATCAGGCACAAGAGCGCCACCCT
GATGCAGGCCACCTGGCGAGGCTGGTGGTGGCGCAAGAAGATGGGCAATG
GCGGGGCCAAGCGCTCCAAAATCCCAGGTCTTCAACAGGCGCCACTGCCG
AACAACAAGACCACGCCGAACTCCGCCGCACAGAACAAGGCCGCATCCTC
CACAATGGCCGCCCTTGCCGCTGTGGCAGCTGCTGCTCCCATTTCTGTAC
CACGCCTCTCGGCCAAGACAACGAGCCTGGGCATTGGAGGCACTGTGGCC
AGACCAAGGCCACAGCCCATTGCTGGGACTCCTCCGCCGGATCCGCAGGA
GAAGTGCGACCAGAAGATCATTCAGCAGACCTGTAACCTGTTTGGACTCG
ATTTGGAACGTCCGCCGCCAGTTCCGCCGTCTCGTTCCTACACGATCACC
GGGAATTCGAAAATAAGCTATCCCCAAAACCGGGTCATGAAGATGAACTT
TCCAGAGGAGGGACAGTCGGAGGCGCCGCAGCTGAAGAAGGGCGAAGCGG
TGACCGTAGTGGGGGCCTCCACCGTTCGGGGTCACCTGATGGTGGAGCAC
AAGGGGCAGAGCTTCCACGTTCCCTTCCAGTTCATGACGCTCAGTAAAGC
AAGCTTTCTAGACCAT
BO30655.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:53:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| d-RD | 3735 | CG42840-PD | 1..3732 | 17..3748 | 18660 | 100 | Plus |
| d-RE | 4281 | CG42840-PE | 637..4278 | 107..3748 | 18210 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:53:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| d-RD | 5120 | CG42840-RD | 930..4661 | 17..3748 | 18660 | 100 | Plus |
| d-RE | 5093 | CG42840-RE | 993..4634 | 107..3748 | 18210 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:53:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 8486021..8487681 | 1687..3347 | 8305 | 100 | Plus |
| 2L | 23513712 | 2L | 8484810..8485515 | 983..1688 | 3530 | 100 | Plus |
| 2L | 23513712 | 2L | 8483564..8484153 | 393..982 | 2950 | 100 | Plus |
| 2L | 23513712 | 2L | 8483129..8483416 | 107..394 | 1440 | 100 | Plus |
| 2L | 23513712 | 2L | 8487969..8488212 | 3505..3748 | 1220 | 100 | Plus |
| 2L | 23513712 | 2L | 8487744..8487903 | 3347..3506 | 800 | 100 | Plus |
| 2L | 23513712 | 2L | 8479634..8479724 | 17..107 | 455 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 12:53:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3600..3755 | 643..798 | 131 | 56.3 | Plus |
BO30655.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-18 15:59:07 Download gff for
BO30655.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| d-RD | 930..4661 | 17..3750 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:57:15 Download gff for
BO30655.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| d-RD | 930..4661 | 17..3750 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:16:18 Download gff for
BO30655.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| d-RD | 930..4661 | 17..3750 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:16:18 Download gff for
BO30655.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 8479634..8479724 | 17..107 | 100 | -> | Plus |
| 2L | 8483130..8483416 | 108..394 | 100 | -> | Plus |
| 2L | 8483566..8484153 | 395..982 | 100 | -> | Plus |
| 2L | 8484810..8485514 | 983..1687 | 100 | -> | Plus |
| 2L | 8486022..8487681 | 1688..3347 | 100 | -> | Plus |
| 2L | 8487745..8487902 | 3348..3505 | 100 | -> | Plus |
| 2L | 8487970..8488212 | 3506..3750 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:57:15 Download gff for
BO30655.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 8479634..8479724 | 17..107 | 100 | -> | Plus |
| arm_2L | 8483130..8483416 | 108..394 | 100 | -> | Plus |
| arm_2L | 8483566..8484153 | 395..982 | 100 | -> | Plus |
| arm_2L | 8484810..8485514 | 983..1687 | 100 | -> | Plus |
| arm_2L | 8486022..8487681 | 1688..3347 | 100 | -> | Plus |
| arm_2L | 8487745..8487902 | 3348..3505 | 100 | -> | Plus |
| arm_2L | 8487970..8488212 | 3506..3750 | 99 | | Plus |
BO30655.pep Sequence
Translation from 16 to 3766
> BO30655.pep
MATLGLSKVFILDKYFTELQKFWETEKKLQDASSSNEAVHLQQRLKSLST
ELVTLRNRLHVGHGPGQGQSQGNGAQPVAPAPNAGPKANNFDLNASSPNL
NLSSSGAGLSASAVQQHTNGHHTTSKNHSFSHTLPANSGSGGGGGAGGGA
VVSARNTSIPHPLPHQLAEKPGLSHQQSGSGHGQSTGTLPHMSGMGSILG
QNSHSHAPVNNNSNNSNTLPMRTSNSGHLGINGGGVGHHLSHAHSQQLPF
IPQSKHTNPCQSVKTLPFGFGFSESQQKMQQQQQQGNSSPKDMQDLIHLS
GPLTEHAVMRTLQARFNERRYFTNVGPILLSINPYLDVGNPLTLTSTRAM
PLAPQLQKIVQEAVRQQSETGYPQAIILSGTSGAGKTANAMLMLRQLFAI
AGGGPETDAFKHLAAAFTVLRSLGSAKTTTNSESSRIGQFIEVQVTDGAL
YRTKIHCYFLDQTRVIRPLPKEKNYHIFYQLLAGLSREERQKLHLDGYSP
ANLRYLRGDIGQNEQEDAARFQAWKTCLGILGIPFLDVVRVLAAVLLLGN
VQFIDGGGLEVDVKGETELNSVASLLGVPPAALFRGLTTRTHNVRGQLVK
SVCGDGDANMTRDCLAKALYCRTVATIVRRANSLKRLGSTLGTLSSDSNE
SVHNQADVASQHASTIGGGNAGSKSMAALNNAVRHATSDGFIGILDMFGF
EEPSPHAHLEHLCINLCAETMQHFYNTHIFKSSVESCRDEGIVCDTEVDY
VDNVPCIDLISSLRTGLLSMLDAECSVRGTAESYVTKLKVQHRSSTRLET
KPTAEPHDPRMFLIRHFAGRVEYDTTDFLDTNRDVVPDDLVGVFYKHTCN
FGFATHLFGSELKALYAQQQAPRGLSFRISPTSHSDLLNGDEPVSTLTQD
FHTRLDNLLRTLVHARPHFVRCIRSNGTEAARSFDRATVVRQIRSLQVLE
TVNLMASGFPHRMRFKQFNARYRMLAPFRLLRRSEDKALEDCQLILKYAM
EQPPVLDGSVTLAWAPGKRHVFLSEGIRQHLEHLRTEIRHKSATLMQATW
RGWWWRKKMGNGGAKRSKIPGLQQAPLPNNKTTPNSAAQNKAASSTMAAL
AAVAAAAPISVPRLSAKTTSLGIGGTVARPRPQPIAGTPPPDPQEKCDQK
IIQQTCNLFGLDLERPPPVPPSRSYTITGNSKISYPQNRVMKMNFPEEGQ
SEAPQLKKGEAVTVVGASTVRGHLMVEHKGQSFHVPFQFMTLSKASFLDH
BO30655.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:58:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| d-PD | 1244 | CG42840-PD | 1..1244 | 1..1244 | 6481 | 100 | Plus |
| d-PE | 1426 | CG42840-PE | 206..1426 | 24..1244 | 6331 | 99.5 | Plus |
| Myo28B1-PD | 1033 | CG6976-PD | 63..760 | 288..1059 | 727 | 29.9 | Plus |
| Myo28B1-PC | 1034 | CG6976-PC | 64..761 | 288..1059 | 727 | 29.9 | Plus |
| Myo28B1-PA | 2121 | CG6976-PA | 63..760 | 288..1059 | 727 | 29.9 | Plus |
