BO30660.complete Sequence
3172 bp assembled on 2011-11-09
GenBank Submission: KX798918
> BO30660.complete
GAAGTTATCAGTCGACATGGAGGCCACCACTACCACAACACCTGACTTGA
ATCGCGGCGATGCCACCAGGAAGAGTGTCCGGCTGTATGCCGCCCGCAAG
GGGGCGGCACCTGCGCCGCCCAAGCTCAGTGTGGCGCCATCTAGTAACCA
GAACAGCAACCACAGCAGCAACAACAACAATAGCAGCAGTAACTTGCCGG
AAACGGAAAAGGAAATGGAACTGCGTCAAACACATCTTGCCAACAAGGAT
CTCGATGGAGCCACCGAAGACGACAGCATAGTGGAGCTTCGACGACGTGA
TGCCCAAGCCACTCCATTGCCCAGGATAGCCGTATCGGCTCTACCCACCC
TACAGCCGCATCCCACGCCCAAAGAACGCCAAAAGCCGCCAATGCCACGC
CTTCTGTCCACCGAAGACGATGCCGGTGTGTCCTTTGCCCTCGGCTCCAT
CGAGAAGCACATCCATAACGTGGAGGAGAGCTTTAAGCAACAGCAGCAAA
ACCAACAATCCCAATCATCGATGGACGTGATGAAACTGGAGATCAAGCGC
AAGCAGAGCAAGCGCTACGGTGAAACGGAAAACCTTCTGCGACCGGGCAT
TAGTGACATGTCCTCCGAGAATGATTTTCAGTATTTGGGCGGCAGGCGGG
CAGGAGAACTGGATGACAGCAATGAGCTGATGTTATCGGAATTCCAGCGC
GGCAGCGATGGTCGTAACTCGATCGGAGCCTATTCCAAGAACTCGGCTGC
TGCCGCAAACGGAGCAAATGCTGTGAAGGCTAAACTGGCACGTACTGCCT
CCGATACGAAGAATAATGATACGGTGCTGGCCATGAGGGCCACTTTTAAG
CAGAAGCAGCACTTGCAGGACGAGAAACAGCCAGCGGTATGGCGACCAGC
TGGCACTGGACCCACTCCGGCGGCCAGGAGCTCCTCCTCCACCACGTCCA
CCTCCGGCTCGGCCAGTCGTGGCGGTAGCAGCAGCAGCGTGGTGGATGGA
GTGGCTCCATCTAAGCTTACGGCCACTACCATTTCAGCGTCTAAGCGGCG
TGAGGAGAATTTGCGACAATTTGAAGCTTTGTTGGCCCAAAAATCCTCAC
ATCGTCATGGAGCATCTGGTGCCTCGGGAACAGGAAGTAATGCAGCCAGT
TCGAAAAGACGTTCGGACCGGCCGATTGTGGCTCCTATTCCTCCGTACAA
TTCCAGTCGAGCAGAGCATGTGACCAGCTCGACCAGACACAGCGTTGATC
CAAGATCCCATTCGGGACACGAGTCGAGGTCAGGAACAGCCTCAACTCAC
CCGCCTGTAGGACATCATCCCACTAGCCGCGTACCCAGCGTGGTGGCAAA
CCGCAGCAATGTGTACAGCAACAATGCTGCGCAGGGTTCGCCTAACATGC
AAATGCGGAGTAGTGCTCCTATGCGATGGCGTGCTACTGAGGAGCATATT
GGCAAATACAAACTCATAAAGACGATCGGCAAGGGCAATTTTGCCAAGGT
GAAACTAGCGAAACACCTGCCCACTGGCAAGGAGGTCGCCATCAAGATAA
TTGACAAGACCCAACTCAATCCTGGGTCACTACAGAAACTCTTTAGAGAG
GTTAGAATAATGAAGATGCTGGATCACCCCAACATAGTTAAATTGTTCCA
AGTAATCGAAACGGAGAAGACGCTCTATCTGATCATGGAGTACGCATCTG
GCGGAGAAGTCTTCGACTACCTGGTTCTCCACGGACGCATGAAGGAGAAG
GAGGCGCGAGTTAAGTTTCGACAAATCGTCTCAGCCGTGCAATATTGTCA
TCAAAAAAGAATAATTCACAGGGACTTAAAAGCTGAAAACCTTTTGCTGG
ACAGCGAACTGAACATCAAAATCGCTGACTTTGGCTTTTCGAACGAGTTC
ACACCCGGCTCAAAGCTGGACACGTTCTGCGGTAGCCCGCCATATGCGGC
ACCGGAGCTGTTTCAGGGCAAAAAGTACGACGGACCGGAGGTCGATGTTT
GGTCGCTGGGCGTCATCCTGTATACGTTAGTGAGCGGTTCCCTGCCCTTC
GACGGCTCCACCTTGAGGGAGTTGCGTGAACGCGTGCTCAGAGGCAAATA
TAGAATTCCCTTCTATATGTCGACTGACTGCGAAAACTTGCTCCGCAAAT
TCTTAGTACTGAATCCCGCAAAGCGTGCTAGTCTGGAAACAATCATGGGC
GACAAGTGGATGAACATGGGGTTTGAGGAGGACGAACTCAAGCCCTATAT
TGAGCCCAAAGCCGATTTAGCCGATCCCAAGCGGATAGAAGCTCTAGTCG
CGATGGGCTACAATCGATCGGAGATCGAGGCTTCGCTCTCCCAGGTGCGC
TACGACGATGTTTTCGCCACATATTTGCTGCTGGGTCGCAAGAGTACAGA
CCCGGAAAGTGACGGATCGCGGTCTGGCTCCTCGCTCTCACTGCGCAACA
TCTCGGGTAATGATGCGGGCGCCAATGCTGGTAGTGCGAGTGTTCAGAGT
CCCACGCACAGAGGAGTCCACAGGAGCATATCGGCGTCTAGCACGAAGCC
AAGTCGCCGAGCCTCGTCTGGTGTTGGACCGACAAATGCGGCAGCAACAG
TTGCGGCGGCCACGGGAGCCGTTGGTGCGGTTAATCCAAGCAATAACTAC
AATGCTGCAGGATCAGCGGCGGATCGAGCATCAGTTGGCAGCAACTTTAA
GCGACAGAACACAATCGACTCGGCTACGATTAAGGAGAACACAGCGCGAC
TGGCCGCTCAAAATCAGAGACCCGCTTCGGCCACACAAAAGATGCTCACC
ACGGCAGACACCACACTGAACAGTCCCGCCAAGCCGCGAACGGCAACGAA
GTACGATCCGACGAATGGCAATCGCACGGTCAGCGGCACAAGTGGCATCA
TTCCACGTCGCTCCACCACGCTTTATGAAAAGACTTCGTCGACGGAGAAA
ACCAACGTTATTCCTGCAGAGACAAAACACTTTCCAAGGAATGTTCCATC
ACGTTCAACCTTTCACTCTGGTCAAACCAGAGCACGAAACAACACAGCGC
TGGAATACTCGGGCACCAGCGGTGCCTCCGGCGACTCCTCCCATCCGGGT
CGCATGAGCTTCTTCTCCAAACTCTCCTCACGTTTTAGCAAACGGCCAAA
CCAGGCAAGCTTTCTAGACCAT
BO30660.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 07:39:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| par-1-RR | 3141 | CG8201-PR | 1..3138 | 17..3154 | 15690 | 100 | Plus |
| par-1-RT | 3177 | CG8201-PT | 1..2970 | 17..2977 | 14680 | 99.7 | Plus |
| par-1-RP | 3426 | CG8201-PP | 1..2985 | 17..2977 | 14495 | 99.2 | Plus |
| par-1-RT | 3177 | CG8201-PT | 2997..3174 | 2977..3154 | 890 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 07:39:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| par-1-RR | 3918 | CG8201-RR | 358..3495 | 17..3154 | 15690 | 100 | Plus |
| par-1-RT | 4990 | CG8201-RT | 402..3371 | 17..2977 | 14680 | 99.7 | Plus |
| par-1-RP | 4849 | CG8201-RP | 358..3342 | 17..2977 | 14495 | 99.2 | Plus |
| par-1-RT | 4990 | CG8201-RT | 3398..3575 | 2977..3154 | 890 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 07:39:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 19468971..19470339 | 17..1385 | 6845 | 100 | Plus |
| 2R | 25286936 | 2R | 19471205..19471490 | 1818..2103 | 1430 | 100 | Plus |
| 2R | 25286936 | 2R | 19470870..19471093 | 1599..1822 | 1120 | 100 | Plus |
| 2R | 25286936 | 2R | 19470594..19470815 | 1382..1603 | 1110 | 100 | Plus |
| 2R | 25286936 | 2R | 19471550..19471736 | 2102..2288 | 935 | 100 | Plus |
| 2R | 25286936 | 2R | 19472996..19473167 | 2402..2573 | 860 | 100 | Plus |
| 2R | 25286936 | 2R | 19473805..19473967 | 2814..2976 | 815 | 100 | Plus |
| 2R | 25286936 | 2R | 19473613..19473740 | 2686..2813 | 640 | 100 | Plus |
| 2R | 25286936 | 2R | 19478741..19478866 | 3020..3145 | 630 | 100 | Plus |
| 2R | 25286936 | 2R | 19472816..19472931 | 2286..2401 | 580 | 100 | Plus |
| 2R | 25286936 | 2R | 19473439..19473554 | 2570..2685 | 580 | 100 | Plus |
| 3R | 32079331 | 3R | 11349636..11350354 | 2175..1457 | 280 | 69.3 | Minus |
| 2R | 25286936 | 2R | 19477661..19477706 | 2977..3022 | 230 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 07:39:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1516..1569 | 140..193 | 180 | 81.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6765..6848 | 152..236 | 161 | 67.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6712..6794 | 140..221 | 159 | 70.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6795..6842 | 146..193 | 159 | 81.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2369..2427 | 134..193 | 153 | 75 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2326..2455 | 147..278 | 150 | 60.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6744..6828 | 152..234 | 150 | 67.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2380..2421 | 152..193 | 147 | 83.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6813..6931 | 143..259 | 147 | 63.6 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1108..1163 | 131..187 | 147 | 75.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1540..1586 | 143..189 | 145 | 78.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2320..2403 | 152..236 | 143 | 64.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2631..2673 | 146..187 | 140 | 83.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6721..6773 | 141..193 | 139 | 73.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2788..2832 | 143..187 | 135 | 77.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2389..2443 | 143..194 | 133 | 74.5 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1107..1200 | 143..234 | 132 | 63.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6862..6914 | 141..193 | 130 | 71.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2440..2490 | 143..193 | 129 | 72.5 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1095..1145 | 143..193 | 129 | 72.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2785..2823 | 155..193 | 123 | 79.5 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3269..3322 | 136..188 | 123 | 72.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6966 | 163..410 | 121 | 57.4 | Plus |
| BS | 5142 | BS BS 5142bp | 2028..2080 | 143..195 | 121 | 69.8 | Plus |
| Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 7955..8004 | 154..207 | 117 | 72.2 | Plus |
| TART-C | 11124 | TART-C TARTC 11124bp | 9399..9448 | 154..207 | 117 | 72.2 | Plus |
BO30660.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-09 10:40:45 Download gff for
BO30660.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| par-1-RM | 310..3285 | 17..2978 | 99 | <- | Plus |
| par-1-RM | 3314..3489 | 2979..3156 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:28:33 Download gff for
BO30660.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| par-1-RR | 358..3495 | 17..3156 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:01:09 Download gff for
BO30660.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| par-1-RR | 358..3495 | 17..3156 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:01:09 Download gff for
BO30660.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 19472819..19472931 | 2289..2401 | 100 | -> | Plus |
| 2R | 19473613..19473740 | 2686..2813 | 100 | -> | Plus |
| 2R | 19472996..19473164 | 2402..2570 | 100 | -> | Plus |
| 2R | 19471552..19471736 | 2104..2288 | 100 | -> | Plus |
| 2R | 19473440..19473554 | 2571..2685 | 100 | -> | Plus |
| 2R | 19473805..19473967 | 2814..2976 | 100 | -> | Plus |
| 2R | 19477661..19477704 | 2977..3020 | 100 | -> | Plus |
| 2R | 19478742..19478869 | 3021..3149 | 98 | | Plus |
| 2R | 19468971..19470338 | 17..1384 | 100 | -> | Plus |
| 2R | 19470597..19470812 | 1385..1600 | 100 | -> | Plus |
| 2R | 19470872..19471092 | 1601..1821 | 100 | -> | Plus |
| 2R | 19471209..19471490 | 1822..2103 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:28:33 Download gff for
BO30660.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 15358102..15358317 | 1385..1600 | 100 | -> | Plus |
| arm_2R | 15358377..15358597 | 1601..1821 | 100 | -> | Plus |
| arm_2R | 15356476..15357843 | 17..1384 | 100 | -> | Plus |
| arm_2R | 15358714..15358995 | 1822..2103 | 100 | -> | Plus |
| arm_2R | 15359057..15359241 | 2104..2288 | 100 | -> | Plus |
| arm_2R | 15360324..15360436 | 2289..2401 | 100 | -> | Plus |
| arm_2R | 15360501..15360669 | 2402..2570 | 100 | -> | Plus |
| arm_2R | 15360945..15361059 | 2571..2685 | 100 | -> | Plus |
| arm_2R | 15361118..15361245 | 2686..2813 | 100 | -> | Plus |
| arm_2R | 15361310..15361472 | 2814..2976 | 100 | -> | Plus |
| arm_2R | 15365166..15365209 | 2977..3020 | 100 | -> | Plus |
| arm_2R | 15366247..15366374 | 3021..3149 | 98 | | Plus |
BO30660.pep Sequence
Translation from 16 to 3172
> BO30660.pep
MEATTTTTPDLNRGDATRKSVRLYAARKGAAPAPPKLSVAPSSNQNSNHS
SNNNNSSSNLPETEKEMELRQTHLANKDLDGATEDDSIVELRRRDAQATP
LPRIAVSALPTLQPHPTPKERQKPPMPRLLSTEDDAGVSFALGSIEKHIH
NVEESFKQQQQNQQSQSSMDVMKLEIKRKQSKRYGETENLLRPGISDMSS
ENDFQYLGGRRAGELDDSNELMLSEFQRGSDGRNSIGAYSKNSAAAANGA
NAVKAKLARTASDTKNNDTVLAMRATFKQKQHLQDEKQPAVWRPAGTGPT
PAARSSSSTTSTSGSASRGGSSSSVVDGVAPSKLTATTISASKRREENLR
QFEALLAQKSSHRHGASGASGTGSNAASSKRRSDRPIVAPIPPYNSSRAE
HVTSSTRHSVDPRSHSGHESRSGTASTHPPVGHHPTSRVPSVVANRSNVY
SNNAAQGSPNMQMRSSAPMRWRATEEHIGKYKLIKTIGKGNFAKVKLAKH
LPTGKEVAIKIIDKTQLNPGSLQKLFREVRIMKMLDHPNIVKLFQVIETE
KTLYLIMEYASGGEVFDYLVLHGRMKEKEARVKFRQIVSAVQYCHQKRII
HRDLKAENLLLDSELNIKIADFGFSNEFTPGSKLDTFCGSPPYAAPELFQ
GKKYDGPEVDVWSLGVILYTLVSGSLPFDGSTLRELRERVLRGKYRIPFY
MSTDCENLLRKFLVLNPAKRASLETIMGDKWMNMGFEEDELKPYIEPKAD
LADPKRIEALVAMGYNRSEIEASLSQVRYDDVFATYLLLGRKSTDPESDG
SRSGSSLSLRNISGNDAGANAGSASVQSPTHRGVHRSISASSTKPSRRAS
SGVGPTNAAATVAAATGAVGAVNPSNNYNAAGSAADRASVGSNFKRQNTI
DSATIKENTARLAAQNQRPASATQKMLTTADTTLNSPAKPRTATKYDPTN
GNRTVSGTSGIIPRRSTTLYEKTSSTEKTNVIPAETKHFPRNVPSRSTFH
SGQTRARNNTALEYSGTSGASGDSSHPGRMSFFSKLSSRFSKRPNQASFL
DH
BO30660.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:37:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| par-1-PR | 1046 | CG8201-PR | 1..1046 | 1..1046 | 5323 | 100 | Plus |
| par-1-PT | 1058 | CG8201-PT | 1..1058 | 1..1046 | 5289 | 98.9 | Plus |
| par-1-PP | 1141 | CG8201-PP | 1..1037 | 1..1047 | 5154 | 97.3 | Plus |
| par-1-PS | 827 | CG8201-PS | 27..827 | 234..1046 | 3048 | 77 | Plus |
| par-1-PL | 833 | CG8201-PL | 27..833 | 234..1046 | 3039 | 76.3 | Plus |
