BO30669.complete Sequence
1081 bp assembled on 2011-10-06
GenBank Submission: KX796494
> BO30669.complete
GAAGTTATCAGTCGACATGTCTTTATTCGGAGCGTTGATGGGTGATTTCG
ACGACGATCTCGGCCTTATGAACAACCACATGAACCACACTATGAACGCG
ATGAACATGCAGATGCGCTCGATGAATCGCCTGATGAACAGCTTTATGCC
CGATCCCTTCATGCAGGTCTCGCCCTTTGACCAGGGATTCCAGCAGAACG
CTCTCATGGAGCGTCCGCAGATGCCGGCCATGCCAGCCATGGGCCTCTTC
GGCATGCCCATGATGCCAAACTTTAATCGCCTGTTGAACGCTGATATTGG
TGGCAATTCAGGCGCATCCTTCTGCCAGAGCACCGTGATGACCATGTCAT
CGGGTCCCGATGGGCGTCCTCAGATCTACCAGGCCAGCACTAGTACCAAA
ACAGGACCGGGAGGCGTTCGTGAGACCCGCAGGACGGTGCAGGACTCGCG
CACTGGGGTGAAGAAGATGGCCATTGGTCATCACATCGGCGAGCGGGCAC
ACATTATTGAGAAAGAGCAGGACATGCGCTCAGGACAACTGGAGGAGCGC
CAGGAGTTCATTAATCTGGAGGAGGGAGAAGCCGAGCAGTTTGACAGGGA
GTTTACATCGCGCGCTAGTCGCGGAGCGGTGCAGTCAAGACATCATGCTG
GTGGCATGCAGGCCATCATGCCCGCCCGTCCAGCGGCACACACCTCGACG
TTGACCATTGAGCCAGTGGAGGACGACGACGACGATGATGATGACTGTGT
AATCCAGGAGCAGCAACCGGTTCGCTCCTCCGCGGGCCGCCATTATTCCA
GTGCGCCAACGGCACCGCAGAACAGTGGCAACATTGCAACAGCAGCAGCA
CCAACACCAACATCCTCGCCAACAACCTACGATACAAGCAACGGAAACAA
CAATAACTACGTGAGCTCTCGTCGTTCGTACCTGCGAAATGGGCATGGGC
ATAGCCTGGCCACGCCGCGCCGCCCACTAAGGACACCCCCATCCTCGCCG
CTGGCTACGGTGTCCACTTCTCCAAGAGATTGGCGTATTTATAATTCGCG
GTACCACCGCAAGGCAAGCTTTCTAGACCAT
BO30669.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:06:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mlf-RH | 1050 | CG8295-PH | 1..1047 | 17..1063 | 5235 | 100 | Plus |
| Mlf-RE | 1050 | CG8295-PE | 1..1047 | 17..1063 | 5235 | 100 | Plus |
| Mlf-RD | 1131 | CG8295-PD | 1..1010 | 17..1026 | 5050 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:06:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mlf-RH | 1745 | CG8295-RH | 103..1149 | 17..1063 | 5235 | 100 | Plus |
| Mlf-RE | 2112 | CG8295-RE | 109..1155 | 17..1063 | 5235 | 100 | Plus |
| Mlf-RD | 1806 | CG8295-RD | 109..1118 | 17..1026 | 5050 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:05:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 15938447..15938979 | 825..293 | 2665 | 100 | Minus |
| 2R | 25286936 | 2R | 15939037..15939257 | 293..73 | 1105 | 100 | Minus |
| 2R | 25286936 | 2R | 15937679..15937882 | 1026..823 | 1020 | 100 | Minus |
| 2R | 25286936 | 2R | 15939910..15939965 | 72..17 | 280 | 100 | Minus |
| 2R | 25286936 | 2R | 15937290..15937328 | 1063..1025 | 195 | 100 | Minus |
Blast to na_te.dros performed 2014-11-26 16:06:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6680..6833 | 761..916 | 207 | 63.5 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1075..1181 | 803..908 | 188 | 69.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2406..2485 | 837..917 | 186 | 71.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2337..2443 | 807..917 | 184 | 67.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2289..2410 | 783..902 | 173 | 65.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6739..6851 | 803..916 | 170 | 64.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1454..1593 | 736..875 | 167 | 64.1 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1065..1155 | 821..911 | 158 | 66.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2439..2520 | 823..907 | 156 | 68.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6731..6798 | 837..902 | 155 | 72.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2308..2394 | 821..910 | 154 | 66.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6760..6878 | 803..916 | 151 | 62.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6769..6884 | 803..916 | 143 | 63 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2490..2561 | 829..902 | 139 | 70.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6814..6925 | 803..918 | 139 | 61.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2371 | 836..902 | 134 | 68.7 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1096..1160 | 803..864 | 129 | 73.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 882..908 | 722..748 | 117 | 92.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2598..2688 | 807..895 | 117 | 67.7 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1102..1179 | 814..890 | 117 | 66.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6827..6896 | 798..864 | 116 | 68.6 | Plus |
| BS | 5142 | BS BS 5142bp | 2087..2115 | 834..862 | 109 | 86.2 | Plus |
BO30669.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-10-06 17:03:02 Download gff for
BO30669.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mlf-RE | 109..1155 | 17..1065 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:52:18 Download gff for
BO30669.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mlf-RE | 109..1155 | 17..1065 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:11:13 Download gff for
BO30669.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mlf-RE | 109..1155 | 17..1065 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:11:13 Download gff for
BO30669.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 15937288..15937326 | 1027..1065 | 94 | <- | Minus |
| 2R | 15938447..15938978 | 294..825 | 100 | <- | Minus |
| 2R | 15939037..15939257 | 73..293 | 100 | <- | Minus |
| 2R | 15939910..15939965 | 17..72 | 100 | | Minus |
| 2R | 15937679..15937879 | 826..1026 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:52:18 Download gff for
BO30669.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 11824793..11824831 | 1027..1065 | 94 | <- | Minus |
| arm_2R | 11825184..11825384 | 826..1026 | 100 | <- | Minus |
| arm_2R | 11825952..11826483 | 294..825 | 100 | <- | Minus |
| arm_2R | 11826542..11826762 | 73..293 | 100 | <- | Minus |
| arm_2R | 11827415..11827470 | 17..72 | 100 | | Minus |
BO30669.pep Sequence
Translation from 16 to 1081
> BO30669.pep
MSLFGALMGDFDDDLGLMNNHMNHTMNAMNMQMRSMNRLMNSFMPDPFMQ
VSPFDQGFQQNALMERPQMPAMPAMGLFGMPMMPNFNRLLNADIGGNSGA
SFCQSTVMTMSSGPDGRPQIYQASTSTKTGPGGVRETRRTVQDSRTGVKK
MAIGHHIGERAHIIEKEQDMRSGQLEERQEFINLEEGEAEQFDREFTSRA
SRGAVQSRHHAGGMQAIMPARPAAHTSTLTIEPVEDDDDDDDDCVIQEQQ
PVRSSAGRHYSSAPTAPQNSGNIATAAAPTPTSSPTTYDTSNGNNNNYVS
SRRSYLRNGHGHSLATPRRPLRTPPSSPLATVSTSPRDWRIYNSRYHRKA
SFLDH
BO30669.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:27:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mlf-PH | 349 | CG8295-PH | 1..349 | 1..349 | 1843 | 100 | Plus |
| Mlf-PE | 349 | CG8295-PE | 1..349 | 1..349 | 1843 | 100 | Plus |
| Mlf-PD | 376 | CG8295-PD | 1..336 | 1..336 | 1765 | 100 | Plus |
| Mlf-PC | 374 | CG8295-PC | 16..334 | 18..336 | 1669 | 99.4 | Plus |
| Mlf-PB | 273 | CG8295-PB | 1..272 | 1..272 | 1415 | 99.3 | Plus |
