BO30688.complete Sequence
1234 bp assembled on 2011-09-30
GenBank Submission: KX795653
> BO30688.complete
GAAGTTATCAGTCGACATGTCGGGCGATGTGCAGCCGCGTAAGCGCAAGG
ATAAGCGCCGAAAACGCGATGATCGCAAGTCCGAGGGCGATGTGACTGTT
CTGCGTCAGTCCAGTTTTCAAGATGACGACGAATCTTCGCACGGCGTTCA
CATTACAAAGATGGGAAACGAAGATCTCCACCTGCATGTGCACCACGATC
ACGGAACTGGCGGTCACTGGTGCGCCAAGATTATATTCTTCGCCCTGATG
GCAGTGCTCCTCGGTTTGGTGGGTCTGATCATCATGGAGAATCGCGGACT
GGAGGATCTGGACACTCCTCTGTCGGAGTCTAGGTTCTCGAAAGTTTTTG
ATGGCTGGGTGGACGAACATCGAGATGAGCATGATGGTCACGATGTGCAG
GAACCCTCGGGAGAGGCGTTAGATGATCACGATGAACACGACGACCATGA
TGATCATGAAGACGAAGACGAAGAGCCCCTCACAGAAGAGTTAGAAGAAG
AACTGGAGGAAGAGGAAGAGCCAACTGAGGAGGATGAGCCAGCGGCAGAT
GAAGAATATGAGGAGGATGAAGATGAGGAGAACAATGCGGGTGAAAACAT
AACTGCCGAGGATGCGGAGGAGGAGGAAGAGGAGGAGGATAACGATGATG
AAGGCACCGTAGAGGCAACTGTAGAAGCTACCACTGAAGCCACTACGGAA
GCCACTGGCGAATATGAAGCTGAAGAAGATGATGAGGACGAAGCAGCAGC
AGATGATGATGCAGTAGAGTCCACTGAAGCGCCGCTCTCGAAAGCTGAGG
AGCAGGAAGATGATGAGGATGAGGATGAGGAAGAGCAAGAGATCGAAGAA
TCAGTAGAGCCGGAAAGATCCCAATATGCGGCACAAAGTGCTCCCGCCAA
AGATAATAATGACGACGACGATGATGATGATCAAGACAAAAACGATGCAG
ATGATGGGGATGACGACGAATTTGAGTCCCTGGCTCAGCAATTCGAAAAT
GATCCCGAGGATACAGTGCCAGCAAAAGCTGTAGAGAGTGAGGAGCAGGA
TCAAGACCAGGCTGATGAGGAGGAGCCCAAGGAAGAGGGCTCCTCTTGGT
TGGCATCACAAATAAAGCCGAAAGAAGCTGCACCTGCTCCCGCAGAGAAA
GAGGATCCTTTCGAGCAAGAGTTGCGCAAGGCAAACGAGGAGATGATTAG
GGAGCTCAACAATCACGCAAGCTTTCTAGACCAT
BO30688.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:24:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Asph-RJ | 1203 | CG8421-PJ | 1..1200 | 17..1216 | 6000 | 100 | Plus |
| Asph-RH | 2412 | CG8421-PH | 1..1188 | 17..1204 | 5940 | 100 | Plus |
| Asph-RB | 1149 | CG8421-PB | 52..1146 | 122..1216 | 5475 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:24:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Asph-RJ | 3197 | CG8421-RJ | 119..1318 | 17..1216 | 6000 | 100 | Plus |
| Asph-RH | 2783 | CG8421-RH | 119..1306 | 17..1204 | 5940 | 100 | Plus |
| Asph-RB | 3143 | CG8421-RB | 170..1264 | 122..1216 | 5475 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:24:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16112194..16112530 | 466..802 | 1685 | 100 | Plus |
| 2R | 25286936 | 2R | 16111739..16111926 | 121..308 | 940 | 100 | Plus |
| 2R | 25286936 | 2R | 16112789..16112969 | 929..1109 | 905 | 100 | Plus |
| 2R | 25286936 | 2R | 16111983..16112141 | 309..467 | 795 | 100 | Plus |
| 2R | 25286936 | 2R | 16112587..16112715 | 801..929 | 645 | 100 | Plus |
| 2R | 25286936 | 2R | 16114772..16114866 | 1110..1204 | 475 | 100 | Plus |
| 2R | 25286936 | 2R | 16111500..16111554 | 68..122 | 275 | 100 | Plus |
| 2R | 25286936 | 2R | 16110620..16110671 | 17..68 | 260 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:24:56 has no hits.
BO30688.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-30 10:53:24 Download gff for
BO30688.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Asph-RJ | 136..1335 | 17..1218 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 12:39:24 Download gff for
BO30688.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Asph-RJ | 119..1318 | 17..1218 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:17:58 Download gff for
BO30688.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Asph-RJ | 119..1318 | 17..1218 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:17:58 Download gff for
BO30688.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16112196..16112530 | 468..802 | 100 | -> | Plus |
| 2R | 16112589..16112714 | 803..928 | 100 | -> | Plus |
| 2R | 16112789..16112969 | 929..1109 | 100 | -> | Plus |
| 2R | 16114772..16114866 | 1110..1204 | 100 | -> | Plus |
| 2R | 16110620..16110671 | 17..68 | 100 | -> | Plus |
| 2R | 16111501..16111554 | 69..122 | 100 | -> | Plus |
| 2R | 16111741..16111926 | 123..308 | 100 | -> | Plus |
| 2R | 16111983..16112141 | 309..467 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 12:39:24 Download gff for
BO30688.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 11998125..11998176 | 17..68 | 100 | -> | Plus |
| arm_2R | 11999006..11999059 | 69..122 | 100 | -> | Plus |
| arm_2R | 11999246..11999431 | 123..308 | 100 | -> | Plus |
| arm_2R | 11999488..11999646 | 309..467 | 100 | -> | Plus |
| arm_2R | 11999701..12000035 | 468..802 | 100 | -> | Plus |
| arm_2R | 12000094..12000219 | 803..928 | 100 | -> | Plus |
| arm_2R | 12000294..12000474 | 929..1109 | 100 | -> | Plus |
| arm_2R | 12002277..12002371 | 1110..1204 | 100 | -> | Plus |
BO30688.pep Sequence
Translation from 16 to 1234
> BO30688.pep
MSGDVQPRKRKDKRRKRDDRKSEGDVTVLRQSSFQDDDESSHGVHITKMG
NEDLHLHVHHDHGTGGHWCAKIIFFALMAVLLGLVGLIIMENRGLEDLDT
PLSESRFSKVFDGWVDEHRDEHDGHDVQEPSGEALDDHDEHDDHDDHEDE
DEEPLTEELEEELEEEEEPTEEDEPAADEEYEEDEDEENNAGENITAEDA
EEEEEEEDNDDEGTVEATVEATTEATTEATGEYEAEEDDEDEAAADDDAV
ESTEAPLSKAEEQEDDEDEDEEEQEIEESVEPERSQYAAQSAPAKDNNDD
DDDDDQDKNDADDGDDDEFESLAQQFENDPEDTVPAKAVESEEQDQDQAD
EEEPKEEGSSWLASQIKPKEAAPAPAEKEDPFEQELRKANEEMIRELNNH
ASFLDH
BO30688.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:26:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Asph-PJ | 400 | CG8421-PJ | 1..400 | 1..400 | 2112 | 100 | Plus |
| Asph-PH | 803 | CG8421-PH | 1..402 | 1..404 | 2089 | 98.8 | Plus |
| Asph-PB | 382 | CG8421-PB | 1..382 | 1..400 | 1994 | 95.5 | Plus |
| Asph-PA | 785 | CG8421-PA | 1..384 | 1..404 | 1971 | 94.3 | Plus |
| Asph-PI | 575 | CG8421-PI | 1..364 | 1..364 | 1925 | 100 | Plus |
