BO30704.complete Sequence
1843 bp assembled on 2012-04-13
GenBank Submission: KX799573
> BO30704.complete
GAAGTTATCAGTCGACATGGATGACGATCAGCAGTTTTGTTTGCGGTGGA
ACAACCACCAGAGCACACTGATCAGCGTGTTCGACACGTTGCTGGAGAAC
GAGACTCTAGTCGATTGCACGCTAGCCGCCGAGGGCAAATTTCTCAAGGC
CCACAAGGTGGTGCTGTCAGCATGCAGTCCCTACTTTGCTACCTTACTAC
AAGAACAGTACGACAAACATCCCATCTTTATACTCAAGGATGTCAAGTAC
CAAGAGCTGCGCGCCATGATGGACTACATGTACCGCGGCGAGGTCAATAT
CTCGCAGGATCAGCTGGCCGCTCTGCTCAAGGCCGCCGAATCGCTTCAGA
TCAAGGGCCTTTCGGACAATCGCACTGGCGGCGGAGTAGCTCCCAAGCCA
GAGTCCTCCGGCCATCATCGCGGCGGTAAGCTGAGCGGTGCCTACACACT
GGAGCAAACTAAGCGGGCTCGACTGGCCACCGGCGGAGCGATGGATACGT
CTGGCGATGTGTCCGGTTCGCGCGAGGGCTCCTCGAGTCCGTCGCGTCGT
CGCCGAAAAGTCCGACGTCGCAGCATGGAGAATGATGCCCACGACAACTC
AAACTCGTCCGTGTTACAAGCCGCCGCCTCGAATCAGTCAATCCTCCAGC
AGACAGGGGCCGGTTTGGCCGTCTCCGCTTTGGTCACCACCCAGTTGTCC
AGCGGACCGGCAGCCGGAACCAGCAGCCAAGCGTCGTCGACCCAACAACA
GCAGCCATTGACCAGCACCAACGTTACCAAAAAGACTGAAAGCGCTAAAC
TAACATCCTCGACAGCCGCCCCAGCGAGCGGAGCATCTGCGTCAGCGGCT
GTACAACAGGCCCATCTGCATCAGCAGCAGGCGCAGACCACAAGCGATGC
CATTAACACCGAGAATGTACAAGCCCAGAGCCAAGGTGGCGCCCAAGGCG
TCCAAGGCGATGACGAGGACATTGATGAGGGTAGTGCCGTTGGCGGACCA
AACTCGGCCACCGGACCCAATCCCGCCTCCGCCTCTGCATCCGCCGTCCA
TGCCGGAGTTGTGGTAAAGCAGCTGGCCAGCGTTGTGGACAAATCGTCGT
CGAATCACAAACATAAGATCAAAGACAACAGCGTGTCATCAGTGGGCTCC
GAAATGGTTATTGAACCCAAAGCCGAATACGATGACGATGCGCACGATGA
GAATGTTGAGGATTTGACACTGGACGAGGAGGACATGACAATGGAGGAGC
TGGACCAGACGGCCGGCACCAGCCAGGGTGGCGAAGGATCTAGTCAAACA
TATGCAACATGGCAGCACGACAGATCTCAGGATGAACTTGGACTAATGGC
ACAGGATGCACAGCAACGGGATCCCCAAGACTCAATGGTTGTGCCCAAAA
TCACCGCGGTGCGCGGTAGCTCGAAGCGTCTGGCCAGAAGAAAGGCTACC
CTAGCCATCGCTACGGCGATGGCCACTTCCGCCAGTGCAACGCACATGAT
GTCCAGGCGTAAGCGCACCTCTTCATCGTGCAGAAATGCCAGCAGCGGTG
GAAATGCTCCCTCCACATCCACAAGCGCATCATCGGCTACCACCGCATCC
ATATCGAAATCGAAATGCAAATCGTCAGATGCGGCGAGTGCTCCCTTCGT
GTGCCAGACGTGTGGACGTCGCTACCAAGTCCTTGGCACTTTGAGGCGTC
ACATGCGCAAAGAGTGCAATCAGCCGAAGAAGTATGTGTGCCGCATGTGC
GAACGTCGTTTCCACTATAATTTCAAGCTGCAAGATCACTACTACTATGT
GCACAAGGGCGTCCAAAAGAGGGAAGCAAGCTTTCTAGACCAT
BO30704.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:54:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| lola-RQ | 1812 | CG12052-PQ | 1..1809 | 17..1825 | 9045 | 100 | Plus |
| lola-RJ | 2274 | CG12052-PJ | 1..1366 | 17..1382 | 6830 | 100 | Plus |
| lola-RE | 2247 | CG12052-PE | 1..1365 | 17..1381 | 6825 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:54:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| lola-RQ | 2327 | CG12052-RQ | 403..2211 | 17..1825 | 9045 | 100 | Plus |
| lola-RJ | 3703 | CG12052-RJ | 546..1911 | 17..1382 | 6830 | 100 | Plus |
| lola-RE | 3417 | CG12052-RE | 397..1761 | 17..1381 | 6825 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:54:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10532181..10532895 | 1298..584 | 3575 | 100 | Minus |
| 2R | 25286936 | 2R | 10533118..10533511 | 584..191 | 1970 | 100 | Minus |
| 2R | 25286936 | 2R | 10526683..10526976 | 1825..1532 | 1470 | 100 | Minus |
| 2R | 25286936 | 2R | 10533576..10533749 | 190..17 | 870 | 100 | Minus |
| 2R | 25286936 | 2R | 10527066..10527221 | 1533..1378 | 780 | 100 | Minus |
| 2R | 25286936 | 2R | 10532039..10532119 | 1379..1299 | 405 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 04:54:20 has no hits.
BO30704.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-13 10:26:35 Download gff for
BO30704.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lola-RQ | 449..2257 | 17..1827 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:20:45 Download gff for
BO30704.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lola-RQ | 403..2211 | 17..1827 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:39:46 Download gff for
BO30704.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lola-RQ | 403..2211 | 17..1827 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:39:46 Download gff for
BO30704.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10526681..10526974 | 1534..1827 | 99 | <- | Minus |
| 2R | 10527066..10527219 | 1380..1533 | 100 | <- | Minus |
| 2R | 10532039..10532119 | 1299..1379 | 100 | <- | Minus |
| 2R | 10532181..10532894 | 585..1298 | 100 | <- | Minus |
| 2R | 10533118..10533511 | 191..584 | 100 | <- | Minus |
| 2R | 10533576..10533749 | 17..190 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:20:45 Download gff for
BO30704.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 6421081..6421254 | 17..190 | 100 | | Minus |
| arm_2R | 6414186..6414479 | 1534..1827 | 99 | <- | Minus |
| arm_2R | 6414571..6414724 | 1380..1533 | 100 | <- | Minus |
| arm_2R | 6419544..6419624 | 1299..1379 | 100 | <- | Minus |
| arm_2R | 6419686..6420399 | 585..1298 | 100 | <- | Minus |
| arm_2R | 6420623..6421016 | 191..584 | 100 | <- | Minus |
BO30704.pep Sequence
Translation from 16 to 1843
> BO30704.pep
MDDDQQFCLRWNNHQSTLISVFDTLLENETLVDCTLAAEGKFLKAHKVVL
SACSPYFATLLQEQYDKHPIFILKDVKYQELRAMMDYMYRGEVNISQDQL
AALLKAAESLQIKGLSDNRTGGGVAPKPESSGHHRGGKLSGAYTLEQTKR
ARLATGGAMDTSGDVSGSREGSSSPSRRRRKVRRRSMENDAHDNSNSSVL
QAAASNQSILQQTGAGLAVSALVTTQLSSGPAAGTSSQASSTQQQQPLTS
TNVTKKTESAKLTSSTAAPASGASASAAVQQAHLHQQQAQTTSDAINTEN
VQAQSQGGAQGVQGDDEDIDEGSAVGGPNSATGPNPASASASAVHAGVVV
KQLASVVDKSSSNHKHKIKDNSVSSVGSEMVIEPKAEYDDDAHDENVEDL
TLDEEDMTMEELDQTAGTSQGGEGSSQTYATWQHDRSQDELGLMAQDAQQ
RDPQDSMVVPKITAVRGSSKRLARRKATLAIATAMATSASATHMMSRRKR
TSSSCRNASSGGNAPSTSTSASSATTASISKSKCKSSDAASAPFVCQTCG
RRYQVLGTLRRHMRKECNQPKKYVCRMCERRFHYNFKLQDHYYYVHKGVQ
KREASFLDH
BO30704.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:22:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| lola-PQ | 603 | CG12052-PQ | 1..603 | 1..603 | 3055 | 100 | Plus |
| lola-PO | 668 | CG12052-PO | 1..573 | 1..591 | 2360 | 81.4 | Plus |
| lola-PL | 608 | CG12052-PL | 1..596 | 1..591 | 2342 | 79.8 | Plus |
| lola-PP | 963 | CG12052-PP | 1..567 | 1..551 | 2323 | 83.9 | Plus |
| lola-PZ | 665 | CG12052-PZ | 1..569 | 1..577 | 2318 | 82.8 | Plus |
