Clone BO30705 Report

Search the DGRC for BO30705

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:307
Well:5
Vector:pDNR-Dual
Associated Gene/TranscriptVps35-RB
Protein status:BO30705.pep: Imported from assembly
Sequenced Size:2500

Clone Sequence Records

BO30705.complete Sequence

2500 bp assembled on 2012-04-13

GenBank Submission: KX796227

> BO30705.complete
GAAGTTATCAGTCGACATGTATCCCTGGAGCTCCTCCTCGTACGGCGGCC
AGATTCCCAGTGCCGCCAACGTCCGGACCATGCCGAATGGTTTGGATGAC
CAGGAGAAGCTGCTCGCTGAAGCCATTGGACTAGCGAGGAAGCAGGCCTT
TCAAATGAACCACTTTCTGGATAAGGAGCGTATGCTGGACTCGCTCAAGT
GCGCCAGCACCATGCTGGGCGAGCTGCGGACCTCCGTCCTTTCCCCCAAA
AGTTACTACGAGCTGTACATGGCCGTCACCAACGAACTGTGCCACCTGGA
GCTGTACCTCAGCGAGAAAATCGACAAGAAAACGGATTTGTACGAGCTCG
TTCAGTACTCGCATACTATTGTGCCGCGGTTGTACCTCCTCATAACAGTG
GGCATTGTGTATATCAAGAATGACCCTACGCTGAAGCGCAGCATTCTAAA
GGACCTGGTCGAGATGTGCCGCGGTGTCCAGCATCCGTTGCGAGGCCTCT
TTCTGCGCAACTACCTGCTGCAGTGCACCCGGAACATCCTGCCCGATGTG
ATGGTTGAGGAGAACGAGCACGAGGGCAATGTCTATGATGCCATCGACTT
CGTGCTGACCAACTTTGCCGAGATGAACAAGCTGTGGGTCCGCATGCAGC
ACCAGGGACACTCCAGCGAAAAGACGCGTCGCGAGAAGGAGCGTGAGGAA
CTAAAGATCCTGGTAGGCACTAATCTGGTGCGGTTGTCCCAGCTGGAGTC
GGCCACTCTGGAAATCTACCAGCGACTCATTCTACCCGGCATCCTGGAGC
AGGTGGTCAGCTGTCGCGATGCAATTGCACAGGAGTACCTAATGGAGTGC
ATCATCCAGGTGTTCCCCGACGAGTTCCACCTAAAGACACTTGACCCCTT
CCTAAAGTCCTGCGCTCAGCTGGAGACCGGTGTTAATGTGAAGAACATCA
TAATATCGTTAATCGAACGATTGGCTGCCTATAACCAGCGAAGTGGCAAG
ACAAGTGGTAATGCCATCGATGCCATCATACCCGCCGAGGTGGAACTGTT
TGAAGTTTTCAGTGTCCAAGTGGCTAACATCGTGCAGACCCGAATGGACA
TGCCGTTGGAGGACACCATATCGCTGCAGGTTGCTCTGCTGAGCTTGGCT
CAGAAAGTGTATCCCGATCGAGTTGACTATGTAGATAAGGTGCTGGGCAC
AACCGCTCAAATTTTGCAGCGCATGAACATGAACAACATCTCCCATTTGC
TATCTGTAAACCAGGAGTTATCGCGCCTTCTGCGCATCTGTATCGACTTC
TACAACAACGCCTTGACCATAATTCAACTTCAAAACTTTTGCCCGCTGCT
CGAAAAGTTTGACTACACATCCCGTAAATCGCTGGCCCTGTACCTAGTTA
TGAACATCTTGGACAACGAAACCCTAGTTCCAACAGCTGATCAGGCGGAT
AGTCTGCTGACCATCATTACGCCGTTGATTAAGGACGATGATACGAACAA
AGAAAACGGCGCGGCAGCAGGAAATACGACTCCGGATGCCGAGGAGTTTG
CCGAAGAGCAGGGGGTTGTGGCACGATTTATTCACCTCATGCGCTCAGAT
GAACCGGACATGCAGTATAAAATGCTGCAGACCGCCCGAAAGCATCTGGG
AAATGGGGGCGGGCAAAGGCTAAAGCATGTCCTACCTCCGCTTGTCTTCG
CCGCCTATCAGCTGGCCTTCAAGTACAAGGCGATCGCCGAGCAGGATGAG
AACTGGGACAAGAAGTGTCAGAAAATCGTGCAATACTGCCACAGTACCAT
CAGTGCGCTGGCCAAAGCCGATCTCGCAGACCTAGCCCTGCGTCTATACC
TGCAAGGTGCCCTGGTCATTGGGGAGATCGGTTATACGAATCACGAAACG
GTGGCATACGAATTCATGACCCAGGCCTTCTCCCTCTACGAAGACGAGAT
CTCCGACTCAAAGGCCCAGCTTGCAGCCATAACGCTCATCATGTCCACTT
TTGAACAAATGTCCTGCTTTGGCGAGGAGAACGCTGAGCCGCTTAGGACG
AATTGTGCGCTGGCTGCTTCAAAATTGCTGAAAAAACCGGATCAATGTCG
CGGTGTTGTGGCCTGTGCGGCGCTTTTCTGGAGTGGAAAGCAAAACGGCG
AGGAGATGCGTGACGAGAAGCGAACTTTGGACTGCTTAAAGAAGGGTGCT
CGCATCGCTTCGCAGTGCTTGGATACCGGAGTGCAAGTTCAATTGTATGT
GGAGCTGCTGAATCACTATCTGTTTTACTTCGAACGCGGCAACTCGCTTA
TCACTGTGGCTATGCTCAACCAGCTAATTGCCAAGGTGAATGAGGAGCTG
CCCAACCTGGAGCCCAGCGAGGAGACCAAACAGATCGAGAGCCATTACAA
GAACACGCTGGCACACATCCGCAGTCGCATGGAATCCAATGACTCGTCGC
TGGAGGTCTCCTTTGCGGGCATAACTCTCAATGCAAGCTTTCTAGACCAT

BO30705.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:54:45
Subject Length Description Subject Range Query Range Score Percent Strand
Vps35-RB 2469 CG5625-PB 1..2466 17..2482 12330 100 Plus
Vps35-RA 2412 CG5625-PA 3..2409 76..2482 12035 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:54:46
Subject Length Description Subject Range Query Range Score Percent Strand
Vps35-RB 3369 CG5625-RB 289..2755 16..2482 12335 100 Plus
Vps35-RA 3015 CG5625-RA 123..2529 76..2482 12035 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:54:43
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22186768..22187501 267..1000 3670 100 Plus
2R 25286936 2R 22188244..22188809 1575..2140 2830 100 Plus
2R 25286936 2R 22187852..22188190 1237..1575 1695 100 Plus
2R 25286936 2R 22187558..22187795 999..1236 1190 100 Plus
2R 25286936 2R 22186516..22186706 76..266 955 100 Plus
2R 25286936 2R 22188868..22189051 2140..2323 920 100 Plus
2R 25286936 2R 22189111..22189272 2321..2482 810 100 Plus
2R 25286936 2R 22186260..22186320 16..76 305 100 Plus
Blast to na_te.dros performed on 2014-11-28 04:54:44 has no hits.

BO30705.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-13 10:26:36 Download gff for BO30705.complete
Subject Subject Range Query Range Percent Splice Strand
Vps35-RB 284..2749 17..2484 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:20:48 Download gff for BO30705.complete
Subject Subject Range Query Range Percent Splice Strand
Vps35-RB 290..2755 17..2484 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:39:52 Download gff for BO30705.complete
Subject Subject Range Query Range Percent Splice Strand
Vps35-RB 290..2755 17..2484 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:39:52 Download gff for BO30705.complete
Subject Subject Range Query Range Percent Splice Strand
2R 22188868..22189051 2140..2323 100 -> Plus
2R 22189114..22189272 2324..2484 98   Plus
2R 22186261..22186320 17..76 100 -> Plus
2R 22186517..22186706 77..266 100 -> Plus
2R 22186768..22187501 267..1000 100 -> Plus
2R 22187560..22187795 1001..1236 100 -> Plus
2R 22187852..22188190 1237..1575 100 -> Plus
2R 22188245..22188808 1576..2139 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:20:48 Download gff for BO30705.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18073766..18073825 17..76 100 -> Plus
arm_2R 18074022..18074211 77..266 100 -> Plus
arm_2R 18074273..18075006 267..1000 100 -> Plus
arm_2R 18075065..18075300 1001..1236 100 -> Plus
arm_2R 18075357..18075695 1237..1575 100 -> Plus
arm_2R 18075750..18076313 1576..2139 100 -> Plus
arm_2R 18076373..18076556 2140..2323 100 -> Plus
arm_2R 18076619..18076777 2324..2484 98   Plus

BO30705.pep Sequence

Translation from 16 to 2500

> BO30705.pep
MYPWSSSSYGGQIPSAANVRTMPNGLDDQEKLLAEAIGLARKQAFQMNHF
LDKERMLDSLKCASTMLGELRTSVLSPKSYYELYMAVTNELCHLELYLSE
KIDKKTDLYELVQYSHTIVPRLYLLITVGIVYIKNDPTLKRSILKDLVEM
CRGVQHPLRGLFLRNYLLQCTRNILPDVMVEENEHEGNVYDAIDFVLTNF
AEMNKLWVRMQHQGHSSEKTRREKEREELKILVGTNLVRLSQLESATLEI
YQRLILPGILEQVVSCRDAIAQEYLMECIIQVFPDEFHLKTLDPFLKSCA
QLETGVNVKNIIISLIERLAAYNQRSGKTSGNAIDAIIPAEVELFEVFSV
QVANIVQTRMDMPLEDTISLQVALLSLAQKVYPDRVDYVDKVLGTTAQIL
QRMNMNNISHLLSVNQELSRLLRICIDFYNNALTIIQLQNFCPLLEKFDY
TSRKSLALYLVMNILDNETLVPTADQADSLLTIITPLIKDDDTNKENGAA
AGNTTPDAEEFAEEQGVVARFIHLMRSDEPDMQYKMLQTARKHLGNGGGQ
RLKHVLPPLVFAAYQLAFKYKAIAEQDENWDKKCQKIVQYCHSTISALAK
ADLADLALRLYLQGALVIGEIGYTNHETVAYEFMTQAFSLYEDEISDSKA
QLAAITLIMSTFEQMSCFGEENAEPLRTNCALAASKLLKKPDQCRGVVAC
AALFWSGKQNGEEMRDEKRTLDCLKKGARIASQCLDTGVQVQLYVELLNH
YLFYFERGNSLITVAMLNQLIAKVNEELPNLEPSEETKQIESHYKNTLAH
IRSRMESNDSSLEVSFAGITLNASFLDH

BO30705.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:22:16
Subject Length Description Subject Range Query Range Score Percent Strand
Vps35-PB 822 CG5625-PB 1..822 1..822 4189 100 Plus
Vps35-PA 803 CG5625-PA 2..803 21..822 4081 100 Plus