BO30705.complete Sequence
2500 bp assembled on 2012-04-13
GenBank Submission: KX796227
> BO30705.complete
GAAGTTATCAGTCGACATGTATCCCTGGAGCTCCTCCTCGTACGGCGGCC
AGATTCCCAGTGCCGCCAACGTCCGGACCATGCCGAATGGTTTGGATGAC
CAGGAGAAGCTGCTCGCTGAAGCCATTGGACTAGCGAGGAAGCAGGCCTT
TCAAATGAACCACTTTCTGGATAAGGAGCGTATGCTGGACTCGCTCAAGT
GCGCCAGCACCATGCTGGGCGAGCTGCGGACCTCCGTCCTTTCCCCCAAA
AGTTACTACGAGCTGTACATGGCCGTCACCAACGAACTGTGCCACCTGGA
GCTGTACCTCAGCGAGAAAATCGACAAGAAAACGGATTTGTACGAGCTCG
TTCAGTACTCGCATACTATTGTGCCGCGGTTGTACCTCCTCATAACAGTG
GGCATTGTGTATATCAAGAATGACCCTACGCTGAAGCGCAGCATTCTAAA
GGACCTGGTCGAGATGTGCCGCGGTGTCCAGCATCCGTTGCGAGGCCTCT
TTCTGCGCAACTACCTGCTGCAGTGCACCCGGAACATCCTGCCCGATGTG
ATGGTTGAGGAGAACGAGCACGAGGGCAATGTCTATGATGCCATCGACTT
CGTGCTGACCAACTTTGCCGAGATGAACAAGCTGTGGGTCCGCATGCAGC
ACCAGGGACACTCCAGCGAAAAGACGCGTCGCGAGAAGGAGCGTGAGGAA
CTAAAGATCCTGGTAGGCACTAATCTGGTGCGGTTGTCCCAGCTGGAGTC
GGCCACTCTGGAAATCTACCAGCGACTCATTCTACCCGGCATCCTGGAGC
AGGTGGTCAGCTGTCGCGATGCAATTGCACAGGAGTACCTAATGGAGTGC
ATCATCCAGGTGTTCCCCGACGAGTTCCACCTAAAGACACTTGACCCCTT
CCTAAAGTCCTGCGCTCAGCTGGAGACCGGTGTTAATGTGAAGAACATCA
TAATATCGTTAATCGAACGATTGGCTGCCTATAACCAGCGAAGTGGCAAG
ACAAGTGGTAATGCCATCGATGCCATCATACCCGCCGAGGTGGAACTGTT
TGAAGTTTTCAGTGTCCAAGTGGCTAACATCGTGCAGACCCGAATGGACA
TGCCGTTGGAGGACACCATATCGCTGCAGGTTGCTCTGCTGAGCTTGGCT
CAGAAAGTGTATCCCGATCGAGTTGACTATGTAGATAAGGTGCTGGGCAC
AACCGCTCAAATTTTGCAGCGCATGAACATGAACAACATCTCCCATTTGC
TATCTGTAAACCAGGAGTTATCGCGCCTTCTGCGCATCTGTATCGACTTC
TACAACAACGCCTTGACCATAATTCAACTTCAAAACTTTTGCCCGCTGCT
CGAAAAGTTTGACTACACATCCCGTAAATCGCTGGCCCTGTACCTAGTTA
TGAACATCTTGGACAACGAAACCCTAGTTCCAACAGCTGATCAGGCGGAT
AGTCTGCTGACCATCATTACGCCGTTGATTAAGGACGATGATACGAACAA
AGAAAACGGCGCGGCAGCAGGAAATACGACTCCGGATGCCGAGGAGTTTG
CCGAAGAGCAGGGGGTTGTGGCACGATTTATTCACCTCATGCGCTCAGAT
GAACCGGACATGCAGTATAAAATGCTGCAGACCGCCCGAAAGCATCTGGG
AAATGGGGGCGGGCAAAGGCTAAAGCATGTCCTACCTCCGCTTGTCTTCG
CCGCCTATCAGCTGGCCTTCAAGTACAAGGCGATCGCCGAGCAGGATGAG
AACTGGGACAAGAAGTGTCAGAAAATCGTGCAATACTGCCACAGTACCAT
CAGTGCGCTGGCCAAAGCCGATCTCGCAGACCTAGCCCTGCGTCTATACC
TGCAAGGTGCCCTGGTCATTGGGGAGATCGGTTATACGAATCACGAAACG
GTGGCATACGAATTCATGACCCAGGCCTTCTCCCTCTACGAAGACGAGAT
CTCCGACTCAAAGGCCCAGCTTGCAGCCATAACGCTCATCATGTCCACTT
TTGAACAAATGTCCTGCTTTGGCGAGGAGAACGCTGAGCCGCTTAGGACG
AATTGTGCGCTGGCTGCTTCAAAATTGCTGAAAAAACCGGATCAATGTCG
CGGTGTTGTGGCCTGTGCGGCGCTTTTCTGGAGTGGAAAGCAAAACGGCG
AGGAGATGCGTGACGAGAAGCGAACTTTGGACTGCTTAAAGAAGGGTGCT
CGCATCGCTTCGCAGTGCTTGGATACCGGAGTGCAAGTTCAATTGTATGT
GGAGCTGCTGAATCACTATCTGTTTTACTTCGAACGCGGCAACTCGCTTA
TCACTGTGGCTATGCTCAACCAGCTAATTGCCAAGGTGAATGAGGAGCTG
CCCAACCTGGAGCCCAGCGAGGAGACCAAACAGATCGAGAGCCATTACAA
GAACACGCTGGCACACATCCGCAGTCGCATGGAATCCAATGACTCGTCGC
TGGAGGTCTCCTTTGCGGGCATAACTCTCAATGCAAGCTTTCTAGACCAT
BO30705.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:54:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vps35-RB | 2469 | CG5625-PB | 1..2466 | 17..2482 | 12330 | 100 | Plus |
Vps35-RA | 2412 | CG5625-PA | 3..2409 | 76..2482 | 12035 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:54:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vps35-RB | 3369 | CG5625-RB | 289..2755 | 16..2482 | 12335 | 100 | Plus |
Vps35-RA | 3015 | CG5625-RA | 123..2529 | 76..2482 | 12035 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:54:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22186768..22187501 | 267..1000 | 3670 | 100 | Plus |
2R | 25286936 | 2R | 22188244..22188809 | 1575..2140 | 2830 | 100 | Plus |
2R | 25286936 | 2R | 22187852..22188190 | 1237..1575 | 1695 | 100 | Plus |
2R | 25286936 | 2R | 22187558..22187795 | 999..1236 | 1190 | 100 | Plus |
2R | 25286936 | 2R | 22186516..22186706 | 76..266 | 955 | 100 | Plus |
2R | 25286936 | 2R | 22188868..22189051 | 2140..2323 | 920 | 100 | Plus |
2R | 25286936 | 2R | 22189111..22189272 | 2321..2482 | 810 | 100 | Plus |
2R | 25286936 | 2R | 22186260..22186320 | 16..76 | 305 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 04:54:44 has no hits.
BO30705.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-13 10:26:36 Download gff for
BO30705.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vps35-RB | 284..2749 | 17..2484 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:20:48 Download gff for
BO30705.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vps35-RB | 290..2755 | 17..2484 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:39:52 Download gff for
BO30705.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vps35-RB | 290..2755 | 17..2484 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:39:52 Download gff for
BO30705.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22188868..22189051 | 2140..2323 | 100 | -> | Plus |
2R | 22189114..22189272 | 2324..2484 | 98 | | Plus |
2R | 22186261..22186320 | 17..76 | 100 | -> | Plus |
2R | 22186517..22186706 | 77..266 | 100 | -> | Plus |
2R | 22186768..22187501 | 267..1000 | 100 | -> | Plus |
2R | 22187560..22187795 | 1001..1236 | 100 | -> | Plus |
2R | 22187852..22188190 | 1237..1575 | 100 | -> | Plus |
2R | 22188245..22188808 | 1576..2139 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:20:48 Download gff for
BO30705.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18073766..18073825 | 17..76 | 100 | -> | Plus |
arm_2R | 18074022..18074211 | 77..266 | 100 | -> | Plus |
arm_2R | 18074273..18075006 | 267..1000 | 100 | -> | Plus |
arm_2R | 18075065..18075300 | 1001..1236 | 100 | -> | Plus |
arm_2R | 18075357..18075695 | 1237..1575 | 100 | -> | Plus |
arm_2R | 18075750..18076313 | 1576..2139 | 100 | -> | Plus |
arm_2R | 18076373..18076556 | 2140..2323 | 100 | -> | Plus |
arm_2R | 18076619..18076777 | 2324..2484 | 98 | | Plus |
BO30705.pep Sequence
Translation from 16 to 2500
> BO30705.pep
MYPWSSSSYGGQIPSAANVRTMPNGLDDQEKLLAEAIGLARKQAFQMNHF
LDKERMLDSLKCASTMLGELRTSVLSPKSYYELYMAVTNELCHLELYLSE
KIDKKTDLYELVQYSHTIVPRLYLLITVGIVYIKNDPTLKRSILKDLVEM
CRGVQHPLRGLFLRNYLLQCTRNILPDVMVEENEHEGNVYDAIDFVLTNF
AEMNKLWVRMQHQGHSSEKTRREKEREELKILVGTNLVRLSQLESATLEI
YQRLILPGILEQVVSCRDAIAQEYLMECIIQVFPDEFHLKTLDPFLKSCA
QLETGVNVKNIIISLIERLAAYNQRSGKTSGNAIDAIIPAEVELFEVFSV
QVANIVQTRMDMPLEDTISLQVALLSLAQKVYPDRVDYVDKVLGTTAQIL
QRMNMNNISHLLSVNQELSRLLRICIDFYNNALTIIQLQNFCPLLEKFDY
TSRKSLALYLVMNILDNETLVPTADQADSLLTIITPLIKDDDTNKENGAA
AGNTTPDAEEFAEEQGVVARFIHLMRSDEPDMQYKMLQTARKHLGNGGGQ
RLKHVLPPLVFAAYQLAFKYKAIAEQDENWDKKCQKIVQYCHSTISALAK
ADLADLALRLYLQGALVIGEIGYTNHETVAYEFMTQAFSLYEDEISDSKA
QLAAITLIMSTFEQMSCFGEENAEPLRTNCALAASKLLKKPDQCRGVVAC
AALFWSGKQNGEEMRDEKRTLDCLKKGARIASQCLDTGVQVQLYVELLNH
YLFYFERGNSLITVAMLNQLIAKVNEELPNLEPSEETKQIESHYKNTLAH
IRSRMESNDSSLEVSFAGITLNASFLDH
BO30705.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:22:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vps35-PB | 822 | CG5625-PB | 1..822 | 1..822 | 4189 | 100 | Plus |
Vps35-PA | 803 | CG5625-PA | 2..803 | 21..822 | 4081 | 100 | Plus |