Clone BO30711 Report

Search the DGRC for BO30711

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:307
Well:11
Vector:pDNR-Dual
Associated Gene/TranscriptCG9531-RA
Protein status:BO30711.pep: Imported from assembly
Sequenced Size:1003

Clone Sequence Records

BO30711.complete Sequence

1003 bp assembled on 2012-03-05

GenBank Submission: KX796582

> BO30711.complete
GAAGTTATCAGTCGACATGCTCAGACAACTGACACGGTCAATGGGCCCGA
CCTCGCGGCTGCTTAAGCAGGTCAACTATGGCACAAATGCCCCAGCTGGC
ACCCACATTCCCGTGACCAAGGCCCTGGAAATTGGACAGTGGGAGGAAAA
GCTCAAGGCCGCCGGCGTCGAGGACAGGAAGTTCAACGTGAAATGCATCG
TGTCGCATGTCCTGAAGCAGAAGTTTAGTTCGGTTCCTGACTCATTTGAC
CAGCTGCAGCTAAATCCCGGCCAGCTGGCGGATTTCGAGCGCTTCCTGGA
GGCCCGTTGTGCCCGCATGCCGTTGCAGCACATCATTGGCGAGTGGGACT
TCATGGACATTACGCTGAAGACATCGCCGTCGGTCTTCATTCCACGCCCC
GAAACGGAGGAGTTTATGCGCCTGGTGATCGATGATCACAAGAACGCAAA
GCACGTCGATCTTTTGGAGGTGGGCTGCGGCTCGGGCGCCATGTCCTTGT
CCATGCTACACAGTCTGCCGCAGGTGGTGGCCACTGCCATTGAGCGTAGC
AAGGCGGCAACCGTGCTGGCTGCGGAGAATGCCAAAATGCTGGGGCTGCT
GAATCGATTTGAGGTACACAACCACACCATGGAGGAGGACAAGTACCTGC
CGGAGGCGCTGAAGGACAAGAAGTACGATTTGATCATCTCCAATCCTCCG
TATGTGAAAACTGAGGAGTTTCAGTTTCTGCATCCCGAAGTCGTGGTGTA
TGAGAACCTTAATGCCCTGGACGGTGGGTCCGATGGATTGAGGGTGGCTC
GACTGGTCTTCGACTTGGCATGCCGGCACCTGCGTCCCGGTGGCAAGCTC
TGGCTGGAACTGGGCAACGACCACCCGCCGATGGTGAAGACCATTATGAA
TCTGAAGTACGAGGGCCGGCTTAAGTTCATCGCCGGTTACAGTGACCAGT
ATCAGCGCGAGAGATTCGTTCAGATCGAGAAGGTCGCAAGCTTTCTAGAC
CAT

BO30711.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:04:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG9531-RB 972 CG9531-PB 1..969 17..985 4755 99.4 Plus
CG9531-RA 972 CG9531-PA 1..969 17..985 4755 99.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:04:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG9531-RB 1221 CG9531-RB 91..1059 17..985 4755 99.4 Plus
CG9531-RA 1369 CG9531-RA 91..1059 17..985 4755 99.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:04:33
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6466816..6467339 750..227 2605 99.8 Minus
2L 23513712 2L 6466527..6466764 985..748 1115 97.9 Minus
2L 23513712 2L 6467399..6467608 226..17 1050 100 Minus
Blast to na_te.dros performed on 2014-11-28 08:04:34 has no hits.

BO30711.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-05 16:15:46 Download gff for BO30711.complete
Subject Subject Range Query Range Percent Splice Strand
CG9531-RA 93..1061 17..987 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:31:15 Download gff for BO30711.complete
Subject Subject Range Query Range Percent Splice Strand
CG9531-RA 91..1059 17..987 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:10:13 Download gff for BO30711.complete
Subject Subject Range Query Range Percent Splice Strand
CG9531-RA 91..1059 17..987 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:10:13 Download gff for BO30711.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6467399..6467608 17..226 100   Minus
2L 6466525..6466764 748..987 97 <- Minus
2L 6466819..6467339 227..747 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:31:15 Download gff for BO30711.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6466525..6466764 748..987 97 <- Minus
arm_2L 6466819..6467339 227..747 99 <- Minus
arm_2L 6467399..6467608 17..226 100   Minus

BO30711.pep Sequence

Translation from 16 to 1003

> BO30711.pep
MLRQLTRSMGPTSRLLKQVNYGTNAPAGTHIPVTKALEIGQWEEKLKAAG
VEDRKFNVKCIVSHVLKQKFSSVPDSFDQLQLNPGQLADFERFLEARCAR
MPLQHIIGEWDFMDITLKTSPSVFIPRPETEEFMRLVIDDHKNAKHVDLL
EVGCGSGAMSLSMLHSLPQVVATAIERSKAATVLAAENAKMLGLLNRFEV
HNHTMEEDKYLPEALKDKKYDLIISNPPYVKTEEFQFLHPEVVVYENLNA
LDGGSDGLRVARLVFDLACRHLRPGGKLWLELGNDHPPMVKTIMNLKYEG
RLKFIAGYSDQYQRERFVQIEKVASFLDH

BO30711.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:40:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG9531-PB 323 CG9531-PB 1..323 1..323 1681 100 Plus
CG9531-PA 323 CG9531-PA 1..323 1..323 1681 100 Plus