Clone BO30712 Report

Search the DGRC for BO30712

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:307
Well:12
Vector:pDNR-Dual
Associated Gene/TranscriptCG13841-RA
Protein status:BO30712.pep: Imported from assembly
Sequenced Size:395

Clone Sequence Records

BO30712.complete Sequence

395 bp assembled on 2012-03-05

GenBank Submission: KX795857

> BO30712.complete
GAAGTTATCAGTTCGACATGATCAGAGTTACTACGTGCCTGTTGATGTTC
GTATTCTTTGTTTTGTACATCCATCAAAATCATGCCGACACCAAAGTGCT
TTACGAATTTCACATCAGGGAAGCCAACCAGCAGCGCGATGAAATGGGAG
AGTTCAAGGATACGTCCGAGGAATCTGACGAGGAACCCGAACTGATCATC
ACGGGCAAACGAACCTCTTCGTACGTTTTTCCCGCCAAGGATAACAACTA
TGTGTACGTGGAAACGGCCACCTATGTGGCGGATAACAATGGCTATCATG
TCAAGTACAACATCACCTTGGATACCGTGGAGCTTGACCGTCGCCTCAGC
GGACAAGCACTTAAGACCACCGCTGGTGCAAGCTTTCTAGACCAT

BO30712.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:04:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG13841-RB 363 CG13841-PB 1..360 18..377 1800 100 Plus
CG13841-RA 363 CG13841-PA 1..360 18..377 1800 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:04:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG13841-RB 541 CG13841-RB 35..394 18..377 1800 100 Plus
CG13841-RA 835 CG13841-RA 35..394 18..377 1800 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:04:37
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22767173..22767437 377..113 1325 100 Minus
3R 32079331 3R 22767505..22767582 112..35 390 100 Minus
Blast to na_te.dros performed on 2014-11-28 08:04:38 has no hits.

BO30712.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-05 16:15:47 Download gff for BO30712.complete
Subject Subject Range Query Range Percent Splice Strand
CG13841-RA 34..394 17..379 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:31:18 Download gff for BO30712.complete
Subject Subject Range Query Range Percent Splice Strand
CG13841-RA 34..394 17..379 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:10:14 Download gff for BO30712.complete
Subject Subject Range Query Range Percent Splice Strand
CG13841-RA 34..394 17..379 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:10:14 Download gff for BO30712.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22767171..22767437 113..379 99 <- Minus
3R 22767505..22767581 36..112 100 <- Minus
3R 22767648..22767665 17..35 94   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:31:18 Download gff for BO30712.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18592893..18593159 113..379 99 <- Minus
arm_3R 18593227..18593303 36..112 100 <- Minus
arm_3R 18593370..18593387 17..35 94   Minus

BO30712.pep Sequence

Translation from 17 to 395

> BO30712.pep
MIRVTTCLLMFVFFVLYIHQNHADTKVLYEFHIREANQQRDEMGEFKDTS
EESDEEPELIITGKRTSSYVFPAKDNNYVYVETATYVADNNGYHVKYNIT
LDTVELDRRLSGQALKTTAGASFLDH

BO30712.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:40:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG13841-PB 120 CG13841-PB 1..120 1..120 625 100 Plus
CG13841-PA 120 CG13841-PA 1..120 1..120 625 100 Plus