Clone BO30713 Report

Search the DGRC for BO30713

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:307
Well:13
Vector:pDNR-Dual
Associated Gene/TranscriptCG3678-RA
Protein status:BO30713.pep: Imported from assembly
Sequenced Size:880

Clone Sequence Records

BO30713.complete Sequence

880 bp assembled on 2012-03-06

GenBank Submission: KX800086

> BO30713.complete
GAAGTTATCAGTCGACATGTCGCTAGATTATGAGAAGATGAGCTGGTCGG
ATGTACGCGATCAGTTCAGAACATGGCGCGAGGAGACGGGTCGCCACAGC
GAGGAGGTGGTCCAGCTGTGGGTTGCTGTGCTGGAGGACAAGGTGCACAA
GACCGGCAACGAGCGGCATCTCATCCTGGAGCAGGTGATCATCGCGGCAT
TGGATACGGCTCGCTTTGACATCGCCACCAAGTGTACCAAGCAGCTGGCC
CTCGAGTTCCCGGGCAGCCTGCGCGTGATGAAGTTCAAAGCGATGCGCTA
CGAGGCCCTGGAGCAGTACGATGAGGCCGACGAGGTCCTGGATGCAATCA
TTGCTAAGGACGAGACAAATGCCGCGCCCAGGAAGCGCAAGATTGCCATC
CTTAAGGCCCGTGGTCGTCGCCTGGAGGCCATCAAGGAGCTCAACGAGTA
TCTGAAGAAGTTTATGTCTGACCAGGAGGCATGGCATGAGCTGTGCAACA
TGTATCTGGCTGAAGGCGAGTTTGGCAAAGCTGCCTTCTGCATGGAGGAG
GTTTTGCTGCACAATCCGCATAGCCATCTAATACACCAGCGTTTGGCAGA
AATACGATACACAATGGGTGGCGTCGAGAATATGGAATCGGCTCGCACTT
ACTATTCGCAGGCCCTGAAGCTTAATCCGCATAACTTGAGGGCCCTTTAT
GGCATTTACTTGTGCTGCAACCATTTGGACAACTCTCGTGCTGTGAGCTC
CAAACGGAAGGAGCTGCAAAAGTTGAGTCAATGGGCCCTCGAACAACTTT
TGACTAAACAAACGATTGTACCCTTGGAGGCTGCCTTTGGAAACCTGGAA
ATTAAATCGAATGCAAGCTTTCTAGACCAT

BO30713.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:28:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG17556-RB 849 CG17556-PB 1..846 17..862 4170 99.5 Plus
CG17556-RA 849 CG17556-PA 1..846 17..862 4170 99.5 Plus
CG3678-RB 849 CG3678-PB 1..846 17..862 4155 99.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:28:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG17556-RB 1089 CG17556-RB 113..958 17..862 4170 99.5 Plus
CG17556-RA 1230 CG17556-RA 113..958 17..862 4170 99.5 Plus
CG3678-RB 1216 CG3678-RB 112..957 17..862 4155 99.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:28:11
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 16991182..16991593 461..50 2060 100 Minus
3R 32079331 3R 16995403..16995814 461..50 2000 99 Minus
3R 32079331 3R 16994814..16995060 862..616 1235 100 Minus
3R 32079331 3R 16990593..16990839 862..616 1160 98 Minus
3R 32079331 3R 16990900..16991057 617..460 790 100 Minus
3R 32079331 3R 16995121..16995278 617..460 790 100 Minus
Blast to na_te.dros performed on 2014-11-28 05:28:12 has no hits.

BO30713.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-06 14:19:04 Download gff for BO30713.complete
Subject Subject Range Query Range Percent Splice Strand
CG17556-RA 130..975 17..864 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:31:04 Download gff for BO30713.complete
Subject Subject Range Query Range Percent Splice Strand
CG17556-RA 113..958 17..864 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:11:54 Download gff for BO30713.complete
Subject Subject Range Query Range Percent Splice Strand
CG17556-RA 113..958 17..864 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:11:54 Download gff for BO30713.complete
Subject Subject Range Query Range Percent Splice Strand
3R 16994810..16995059 617..864 99 <- Minus
3R 16995122..16995278 460..616 100 <- Minus
3R 16995405..16995813 51..459 99 <- Minus
3R 16995926..16995959 17..50 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:31:04 Download gff for BO30713.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12820532..12820781 617..864 99 <- Minus
arm_3R 12820844..12821000 460..616 100 <- Minus
arm_3R 12821127..12821535 51..459 99 <- Minus
arm_3R 12821648..12821681 17..50 100   Minus

BO30713.pep Sequence

Translation from 16 to 880

> BO30713.pep
MSLDYEKMSWSDVRDQFRTWREETGRHSEEVVQLWVAVLEDKVHKTGNER
HLILEQVIIAALDTARFDIATKCTKQLALEFPGSLRVMKFKAMRYEALEQ
YDEADEVLDAIIAKDETNAAPRKRKIAILKARGRRLEAIKELNEYLKKFM
SDQEAWHELCNMYLAEGEFGKAAFCMEEVLLHNPHSHLIHQRLAEIRYTM
GGVENMESARTYYSQALKLNPHNLRALYGIYLCCNHLDNSRAVSSKRKEL
QKLSQWALEQLLTKQTIVPLEAAFGNLEIKSNASFLDH

BO30713.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:50:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG3678-PB 282 CG3678-PB 1..282 1..282 1459 100 Plus
CG3678-PA 282 CG3678-PA 1..282 1..282 1459 100 Plus
CG17556-PB 282 CG17556-PB 1..282 1..282 1456 99.6 Plus
CG17556-PA 282 CG17556-PA 1..282 1..282 1456 99.6 Plus