BO30718.complete Sequence
583 bp assembled on 2012-03-05
GenBank Submission: KX794364
> BO30718.complete
GAAGTTATCAGTCGACATGAATCGGCAGGCGAAATTCCTAATCTTGTGCC
TCTTTGTGGGCCTCTTCTCCGCGAATTTGTGCGAAGAAGCAGTGACCACA
CCGGCTCCAGCGGACACCACCACCCAGGAATCCAAGAACACCACCACTCC
GCCGGACACCACCACTACTGTGACGCCACCGTCGACCTCAACCACGAGCA
CCACAACTGAAAAGACCACGACGACGCCACCAATTACCACATCGACTGAG
AAGACCACAACTTCCACTACTCCAGCCAGCACCACCAGCAGCACCACTCC
GGCCAGCACCACCAGCAGCACCACTCCGGCAACGACCACCACCACGCCTG
GAACTACATCTACGACCACTCCGTCTCCGAACTCGACCACAACTACGCCG
CCGCCACACACATCAACCACTCCGGCGCCGAAGCCCGTGCCGTGCGGTCA
TTTCGATGGATCCTCGTTCATTGGCGGCATTGTGCTGACTCTGGGCCTGC
TCGCTATCGGCTTAGTGGCCTACAAGTTCTACAAGGCCCGCAACGAGCGC
AACTACCACACCCTTGCAAGCTTTCTAGACCAT
BO30718.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:08:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| vsg-RC | 552 | CG16707-PC | 1..549 | 17..565 | 2745 | 100 | Plus |
| vsg-RD | 552 | CG16707-PD | 1..549 | 17..565 | 2745 | 100 | Plus |
| vsg-RE | 789 | CG16707-PE | 1..546 | 17..565 | 2665 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:08:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| vsg-RC | 2167 | CG16707-RC | 122..670 | 17..565 | 2745 | 100 | Plus |
| vsg-RD | 2273 | CG16707-RD | 228..776 | 17..565 | 2745 | 100 | Plus |
| vsg-RE | 2164 | CG16707-RE | 122..667 | 17..565 | 2665 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:08:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9715742..9716219 | 88..565 | 2390 | 100 | Plus |
| 3L | 28110227 | 3L | 9714551..9714623 | 17..89 | 365 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 08:08:02 has no hits.
BO30718.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-05 16:15:54 Download gff for
BO30718.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vsg-RC | 111..659 | 17..567 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:31:55 Download gff for
BO30718.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vsg-RD | 228..776 | 17..567 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:11:38 Download gff for
BO30718.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vsg-RD | 228..776 | 17..567 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:11:38 Download gff for
BO30718.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9714551..9714623 | 17..89 | 100 | -> | Plus |
| 3L | 9715744..9716219 | 90..567 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:31:55 Download gff for
BO30718.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9707651..9707723 | 17..89 | 100 | -> | Plus |
| arm_3L | 9708844..9709319 | 90..567 | 99 | | Plus |
BO30718.pep Sequence
Translation from 16 to 583
> BO30718.pep
MNRQAKFLILCLFVGLFSANLCEEAVTTPAPADTTTQESKNTTTPPDTTT
TVTPPSTSTTSTTTEKTTTTPPITTSTEKTTTSTTPASTTSSTTPASTTS
STTPATTTTTPGTTSTTTPSPNSTTTTPPPHTSTTPAPKPVPCGHFDGSS
FIGGIVLTLGLLAIGLVAYKFYKARNERNYHTLASFLDH
BO30718.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:40:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| vsg-PC | 183 | CG16707-PC | 1..183 | 1..183 | 954 | 100 | Plus |
| vsg-PD | 183 | CG16707-PD | 1..183 | 1..183 | 954 | 100 | Plus |
| vsg-PB | 182 | CG16707-PB | 1..182 | 1..183 | 938 | 99.5 | Plus |
| vsg-PA | 182 | CG16707-PA | 1..182 | 1..183 | 938 | 99.5 | Plus |
| vsg-PE | 262 | CG16707-PE | 1..182 | 1..183 | 938 | 99.5 | Plus |
