Clone BO30721 Report

Search the DGRC for BO30721

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:307
Well:21
Vector:pDNR-Dual
Associated Gene/TranscriptRFeSP-RB
Protein status:BO30721.pep: Imported from assembly
Sequenced Size:724

Clone Sequence Records

BO30721.complete Sequence

724 bp assembled on 2012-03-05

GenBank Submission: KX796892

> BO30721.complete
GAAGTTATCAGTCGACATGATGAACGCCGTGTCGCGTGCTTACGTCAGAG
GCGGAGCCCAGGTCCTCTCCACGGGATTGAAGGCGAGCGGCGTGGCCGTC
AACTCGATGGCCAATCGCCAGGCACACACCGACCTGCAGGTGCCAGACTT
CTCGGCATACCGCCGGGAGTCCGTGAAGGACAGTCGTCGTCGCAACGACA
CCGCCGAGGAGCGCAAGGCCTTCTCCTACTTGATGGTCGGCGCCGGAGCC
GTGGGCGGTGCCTATGCGGCCAAGGGCCTGGTTAACACCTTCATCGGATC
GATGAGCGCCTCCGCCGAAGTGCTGGCCATGGCCAAGATCGAGATCAAGC
TGTCCGACATCCCGGAGGGCAAGTCGGTTACTTTCAAGTGGCGCGGAAAG
CCCCTGTTCATCCGCCACCGCACGGCCGCGGAAATCGAGACCGAGCGAAA
TGTGCCCACATCCACGCTGCGCGATCCGGAGGCTGATGATCAACGTGTGA
TCAAGCCCGAGTGGCTGGTGGTCATCGGAGTGTGCACGCATCTGGGCTGT
GTGCCCATCGCGAACGCCGGCGACTGGGGTGGCTACTACTGCCCCTGCCA
CGGCTCCCACTACGACGCCTCCGGAAGGATCCGCAAGGGACCCGCGCCCC
TCAACTTGGAGGTGCCCACCCACGAGTTCCCCAACGAGGGTCTTCTCGTG
GTCGGCGCAAGCTTTCTAGACCAT

BO30721.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:09:21
Subject Length Description Subject Range Query Range Score Percent Strand
RFeSP-RE 693 CG7361-PE 1..690 17..706 3450 100 Plus
RFeSP-RD 693 CG7361-PD 1..690 17..706 3450 100 Plus
RFeSP-RB 693 CG7361-PB 1..690 17..706 3450 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:09:22
Subject Length Description Subject Range Query Range Score Percent Strand
RFeSP-RE 1000 CG7361-RE 85..774 17..706 3450 100 Plus
RFeSP-RD 1118 CG7361-RD 85..774 17..706 3450 100 Plus
RFeSP-RB 851 CG7361-RB 85..774 17..706 3450 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:09:19
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 1613044..1613424 490..110 1905 100 Minus
2L 23513712 2L 1612773..1612988 706..491 1080 100 Minus
2L 23513712 2L 1613983..1614076 110..17 470 100 Minus
Blast to na_te.dros performed on 2014-11-28 08:09:20 has no hits.

BO30721.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-05 16:15:54 Download gff for BO30721.complete
Subject Subject Range Query Range Percent Splice Strand
RFeSP-RB 107..796 17..708 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:32:01 Download gff for BO30721.complete
Subject Subject Range Query Range Percent Splice Strand
RFeSP-RB 85..774 17..708 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:12:04 Download gff for BO30721.complete
Subject Subject Range Query Range Percent Splice Strand
RFeSP-RB 85..774 17..708 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:12:04 Download gff for BO30721.complete
Subject Subject Range Query Range Percent Splice Strand
2L 1612771..1612988 491..708 99 <- Minus
2L 1613044..1613423 111..490 100 <- Minus
2L 1613983..1614076 17..110 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:32:01 Download gff for BO30721.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 1612771..1612988 491..708 99 <- Minus
arm_2L 1613044..1613423 111..490 100 <- Minus
arm_2L 1613983..1614076 17..110 100   Minus

BO30721.pep Sequence

Translation from 16 to 724

> BO30721.pep
MMNAVSRAYVRGGAQVLSTGLKASGVAVNSMANRQAHTDLQVPDFSAYRR
ESVKDSRRRNDTAEERKAFSYLMVGAGAVGGAYAAKGLVNTFIGSMSASA
EVLAMAKIEIKLSDIPEGKSVTFKWRGKPLFIRHRTAAEIETERNVPTST
LRDPEADDQRVIKPEWLVVIGVCTHLGCVPIANAGDWGGYYCPCHGSHYD
ASGRIRKGPAPLNLEVPTHEFPNEGLLVVGASFLDH

BO30721.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:40:58
Subject Length Description Subject Range Query Range Score Percent Strand
RFeSP-PE 230 CG7361-PE 1..230 1..230 1199 100 Plus
RFeSP-PD 230 CG7361-PD 1..230 1..230 1199 100 Plus
RFeSP-PB 230 CG7361-PB 1..230 1..230 1199 100 Plus