Clone BO30722 Report

Search the DGRC for BO30722

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:307
Well:22
Vector:pDNR-Dual
Associated Gene/TranscriptRabX2-RA
Protein status:BO30722.pep: Imported from assembly
Sequenced Size:619

Clone Sequence Records

BO30722.complete Sequence

619 bp assembled on 2012-03-05

GenBank Submission: KX796930

> BO30722.complete
GAAGTTATCAGTCGACATGAGCCACTTCGACTATCTGTTTAAGGTTCTCG
TCCTGGGTGACAGCGGCGTGGGCAAATCCTGCCTGCTAATGCGTTTCTCG
GATGACCGATTCACCGAGAAATACCTGAGAACGATGGGCATAGATGTCAA
GGCGCGCAGCGTGGAGCTGGTCAGTCGGGTGATGATGCTGCAGGTCTGGG
ATACCTCCGGCGACAAGCGCTTCAATTCGCTGATGCCGTCCAATTATCGC
AGTGCCCATGGCATACTGCTCGTCTACGACATAACGTCGTCCAAAAGTTT
CCAAAACATCGATGGCTGGATGAAGGAGATACGGCGCATGTGTCCGGATA
AGGTAACCGTCCTGCTGGTGGGCAACAAAAGTGATGATCCGAACCATCGC
CAGGTGAGCATGGAGCAGGGGTTCAACTATGCCCATCGTGGGGCACTCGG
CTTTGAAGAGGTTTCCGCCAAGAGTGGAATGAATGTATATGACATATTTA
GCTCGTTGGCAATGGACATATACCATCGTTATGTACTTCACAACCCGATC
AGCCCGATGCCATCTGAGCAGGAAGAGGAGGACGCTGCAGAGTCACCGGA
TGCAAGCTTTCTAGACCAT

BO30722.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:06:37
Subject Length Description Subject Range Query Range Score Percent Strand
RabX2-RA 588 CG2885-PA 1..585 17..601 2925 100 Plus
Rab9Db-RA 594 CG9807-PA 1..591 17..601 1665 86.5 Plus
Rab9E-RA 594 CG32673-PA 1..591 17..601 1635 86.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:06:38
Subject Length Description Subject Range Query Range Score Percent Strand
RabX2-RA 791 CG2885-RA 68..652 17..601 2925 100 Plus
Rab9Db-RA 871 CG9807-RA 68..658 17..601 1665 86.5 Plus
Rab9E-RA 889 CG32673-RA 86..676 17..601 1635 86.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:06:34
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 10417496..10418080 17..601 2925 100 Plus
X 23542271 X 10622568..10623158 601..17 1665 86.5 Minus
X 23542271 X 10661168..10661758 601..17 1635 86.2 Minus
X 23542271 X 10589182..10589772 17..601 1620 86 Plus
X 23542271 X 10950373..10950963 601..17 1620 86 Minus
X 23542271 X 10951907..10952419 529..17 1500 86.2 Minus
Blast to na_te.dros performed on 2014-11-28 08:06:36 has no hits.

BO30722.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-05 16:15:50 Download gff for BO30722.complete
Subject Subject Range Query Range Percent Splice Strand
RabX2-RA 12..596 17..603 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:31:35 Download gff for BO30722.complete
Subject Subject Range Query Range Percent Splice Strand
RabX2-RA 68..652 17..603 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:11:07 Download gff for BO30722.complete
Subject Subject Range Query Range Percent Splice Strand
RabX2-RA 68..652 17..603 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:11:07 Download gff for BO30722.complete
Subject Subject Range Query Range Percent Splice Strand
X 10417496..10418080 17..603 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:31:35 Download gff for BO30722.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 10311529..10312113 17..603 99   Plus

BO30722.pep Sequence

Translation from 16 to 619

> BO30722.pep
MSHFDYLFKVLVLGDSGVGKSCLLMRFSDDRFTEKYLRTMGIDVKARSVE
LVSRVMMLQVWDTSGDKRFNSLMPSNYRSAHGILLVYDITSSKSFQNIDG
WMKEIRRMCPDKVTVLLVGNKSDDPNHRQVSMEQGFNYAHRGALGFEEVS
AKSGMNVYDIFSSLAMDIYHRYVLHNPISPMPSEQEEEDAAESPDASFLD
H

BO30722.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:40:41
Subject Length Description Subject Range Query Range Score Percent Strand
RabX2-PA 195 CG2885-PA 1..195 1..195 1018 100 Plus
Rab9Db-PA 197 CG9807-PA 1..197 1..195 694 72.2 Plus
Rab9E-PA 197 CG32673-PA 1..197 1..195 691 71.7 Plus
Rab9Fa-PA 197 CG32671-PA 1..197 1..195 691 72.2 Plus
Rab9D-PA 197 CG32678-PA 1..197 1..195 688 71.7 Plus