Clone BO30740 Report

Search the DGRC for BO30740

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:307
Well:40
Vector:pDNR-Dual
Associated Gene/TranscriptOr45a-RA
Protein status:BO30740.pep: Imported from assembly
Sequenced Size:1168

Clone Sequence Records

BO30740.complete Sequence

1168 bp assembled on 2012-03-05

GenBank Submission: KX800135

> BO30740.complete
GAAGTTATCAGTCGACATGGACGCCAGCTACTTTGCCGTCCAGAGAAGAG
CTCTGGAAATAGTTGGATTCGATCCCAGTACTCCGCAACTGAGTCTGAAA
CATCCCATCTGGGCCGGGATTCTCATCCTGTCCTTGATCTCTCACAACTG
GCCCATGGTAGTCTATGCCCTGCAGGATCTCTCCGACTTGACCCGTCTGA
CGGACAACTTTGCGGTGTTTATGCAAGGATCACAGAGCACCTTCAAGTTC
CTGGTCATGATGGCGAAACGAAGGCGCATTGGATCGTTGATTCACCGTTT
GCATAAGCTAAACCAGGCGGCCAGTGCCACGCCCAATCACCTGGAGAAGA
TCGAGAGGGAAAACCAACTGGATAGGTATGTCGCCAGGTCCTTTAGAAAT
GCCGCCTACGGAGTGATTTGTGCCTCGGCCATAGCGCCCATGTTGCTTGG
CCTGTGGGGATATGTGGAGACGGGTGTATTTACCCCGACCACACCCATGG
AGTTCAACTTCTGGCTGGACGAGCGAAAGCCTCACTTTTATTGGCCCATC
TACGTTTGGGGCGTACTGGGCGTGGCAGCTGCCGCCTGGTTGGCCATTGC
AACGGACACCCTGTTCTCCTGGCTGACTCACAATGTGGTGATTCAGTTCC
AACTACTGGAGCTTGTTCTCGAAGAGAAGGATCTGAATGGCGGAGACTCT
CGCCTGACCGGGTTTGTTAGTCGTCATCGTATAGCTCTGGATTTGGCCAA
GGAACTAAGTTCGATTTTCGGGGAGATCGTCTTTGTGAAATACATGCTCA
GTTACCTGCAACTCTGCATGTTGGCCTTTCGCTTCAGCCGCAGTGGCTGG
AGTGCCCAGGTGCCATTTAGAGCCACCTTCCTAGTGGCCATCATCATCCA
ACTGAGTTCGTATTGCTATGGAGGCGAGTATATAAAGCAGCAAAGTTTGG
CCATCGCACAAGCCGTTTATGGTCAAATCAATTGGCCAGAAATGACGCCA
AAGAAAAGAAGACTCTGGCAAATGGTGATCATGAGGGCGCAGCGACCGGC
TAAGATTTTTGGATTCATGTTCGTTGTGGACTTGCCACTGCTGCTTTGGG
TCATCAGAACTGCGGGCTCATTTCTGGCCATGCTTAGGACTTTCGAGCGT
GCAAGCTTTCTAGACCAT

BO30740.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:18:11
Subject Length Description Subject Range Query Range Score Percent Strand
Or45a-RA 1137 CG1978-PA 1..1134 17..1150 5670 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:18:12
Subject Length Description Subject Range Query Range Score Percent Strand
Or45a-RA 3461 CG1978-RA 72..1207 15..1150 5680 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:18:09
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9345420..9346506 15..1101 5435 100 Plus
2R 25286936 2R 9346558..9346609 1099..1150 260 100 Plus
Blast to na_te.dros performed on 2014-11-28 08:18:10 has no hits.

BO30740.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-05 16:16:03 Download gff for BO30740.complete
Subject Subject Range Query Range Percent Splice Strand
Or45a-RA 1..1134 17..1152 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:33:04 Download gff for BO30740.complete
Subject Subject Range Query Range Percent Splice Strand
Or45a-RA 74..1207 17..1152 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:15:00 Download gff for BO30740.complete
Subject Subject Range Query Range Percent Splice Strand
Or45a-RA 74..1207 17..1152 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:15:00 Download gff for BO30740.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9345422..9346504 17..1099 100 -> Plus
2R 9346559..9346609 1100..1152 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:33:04 Download gff for BO30740.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5232927..5234009 17..1099 100 -> Plus
arm_2R 5234064..5234114 1100..1152 96   Plus

BO30740.pep Sequence

Translation from 16 to 1168

> BO30740.pep
MDASYFAVQRRALEIVGFDPSTPQLSLKHPIWAGILILSLISHNWPMVVY
ALQDLSDLTRLTDNFAVFMQGSQSTFKFLVMMAKRRRIGSLIHRLHKLNQ
AASATPNHLEKIERENQLDRYVARSFRNAAYGVICASAIAPMLLGLWGYV
ETGVFTPTTPMEFNFWLDERKPHFYWPIYVWGVLGVAAAAWLAIATDTLF
SWLTHNVVIQFQLLELVLEEKDLNGGDSRLTGFVSRHRIALDLAKELSSI
FGEIVFVKYMLSYLQLCMLAFRFSRSGWSAQVPFRATFLVAIIIQLSSYC
YGGEYIKQQSLAIAQAVYGQINWPEMTPKKRRLWQMVIMRAQRPAKIFGF
MFVVDLPLLLWVIRTAGSFLAMLRTFERASFLDH

BO30740.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:41:19
Subject Length Description Subject Range Query Range Score Percent Strand
Or45a-PA 378 CG1978-PA 1..378 1..378 1963 100 Plus
Or9a-PA 392 CG15302-PA 19..390 8..376 313 24.4 Plus
Or82a-PA 385 CG31519-PA 29..385 25..377 293 27 Plus
Or47a-PA 385 CG13225-PA 3..384 4..376 272 23.4 Plus
Or1a-PA 392 CG17885-PA 15..382 9..373 254 23.1 Plus