Clone BO30742 Report

Search the DGRC for BO30742

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:307
Well:42
Vector:pDNR-Dual
Associated Gene/Transcriptm4-RA
Protein status:BO30742.pep: Imported from assembly
Sequenced Size:490

Clone Sequence Records

BO30742.complete Sequence

490 bp assembled on 2012-03-05

GenBank Submission: KX798374

> BO30742.complete
GAAGTTATCAGTCGACATGTGCCAGAACAAGATCAACACCAACAACACCA
TGACCATCAAATCGAACAAGAAGCTGTCCTACAGCGTGAAGAAACTGCTG
CAGAAGATCTTCAAGCAGCAACAGCGCGTCGAGGAGGAGCAGAACCTCAA
GAACGCCCTCAAGGCCAACTCTTTGGAGTCTCTGGAATCCATGGAAAACA
GCCGCAACGCCGATCTGGAATCCGCCTCCATCTGCGCCTCTCTGGAGTCC
TGCGAGAACGAGGCCAACGAGCGTCTCTCCCAGTCCTGCGAAATTGAGGA
CTACGACTTCGAGCAACTGCCCACCGTTCCCGTTCACTTCGTCCGCACCG
CTCACGGCACATTCTTCTGGACCGCCGTCTCCGATTTGCCAGCCGACAAC
GACCTCGTCGAGCCCCTCTACTGCAGCACCTCCAACGCCATCGCTATCCC
CCAGGATCGTTGGGTTCAGGCCGCAAGCTTTCTAGACCAT

BO30742.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:18:27
Subject Length Description Subject Range Query Range Score Percent Strand
E(spl)m4-BFM-RA 459 CG6099-PA 1..456 17..472 2280 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:18:28
Subject Length Description Subject Range Query Range Score Percent Strand
E(spl)m4-BFM-RA 759 CG6099-RA 86..542 16..472 2285 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:18:24
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 26024038..26024494 472..16 2285 100 Minus
Blast to na_te.dros performed 2014-11-28 08:18:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2289..2430 9..154 134 61.3 Plus

BO30742.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-05 16:16:04 Download gff for BO30742.complete
Subject Subject Range Query Range Percent Splice Strand
m4-RA 66..521 17..474 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:33:07 Download gff for BO30742.complete
Subject Subject Range Query Range Percent Splice Strand
E(spl)m4-BFM-RA 87..542 17..474 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:15:06 Download gff for BO30742.complete
Subject Subject Range Query Range Percent Splice Strand
E(spl)m4-BFM-RA 87..542 17..474 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:15:06 Download gff for BO30742.complete
Subject Subject Range Query Range Percent Splice Strand
3R 26024036..26024493 17..474 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:33:07 Download gff for BO30742.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21849758..21850215 17..474 99   Minus

BO30742.pep Sequence

Translation from 16 to 490

> BO30742.pep
MCQNKINTNNTMTIKSNKKLSYSVKKLLQKIFKQQQRVEEEQNLKNALKA
NSLESLESMENSRNADLESASICASLESCENEANERLSQSCEIEDYDFEQ
LPTVPVHFVRTAHGTFFWTAVSDLPADNDLVEPLYCSTSNAIAIPQDRWV
QAASFLDH

BO30742.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:41:20
Subject Length Description Subject Range Query Range Score Percent Strand
E(spl)m4-BFM-PA 152 CG6099-PA 1..152 1..152 784 100 Plus
E(spl)malpha-BFM-PA 138 CG8337-PA 1..138 1..152 217 39.8 Plus