BO30768.complete Sequence
2764 bp assembled on 2012-04-13
GenBank Submission: KX797831
> BO30768.complete
GAAGTTATCAGTCGACATGACCAGGGAGTTGATGCAAAAGTATCCGGAAT
ATTCACGACGCAAATTCGGACCATTCAGACAGCTGGTGCACCAAGCATTC
TCGATCATTTCGGAAAGCTATAACTTGGACAAGGTAAGCAGTTCCGAGGA
AGATTGTGTTAGCGAGGACTCCGAGCCACCACCCACGAATAGTGTGATGA
ACAATATGATGAACAGCCTGTATAGTCAACCAAGAAAGCCGCTGGCGCCC
AAGCCAATCAGCGAGCCCATCGATATATCCAGTGGAGACGAGAACGAAGA
TGACTCCAATACAAAAACCACCAACGGAGATGGGGTAGCTGCTGCTGCTG
CTCCTCCTCCTCCTACTCCAGCAGTGCAGGGCAGTGCTTTGAAACGCCTG
ATGGAGGAAGTGCCGGAGATCGCAGTGGCTGCAAAGAAAGTAGCTAAACC
GAATACTATTCACGTTAGCAGTTCGGAGGCCATTCAAAAGCTGCACCAAG
TTGTGGGCAACAGAGCGAAAAATCTTTCAGAGGACGCCGTTCCGCGTTCC
AAAGATCACCGTAATGTGCCTGGCTTATATCAGCAGTTGCACCAAAACCA
AAGTCGCGATCGCCTTCGGAAGTTCAAAAGGGATCTGGAGGTGCAGCACC
CAACGGAAAGTTTCCGGGACATTGGTGGCATGGATAGCACTCTTAAGGAG
TTGTGTGAAATGCTGATCCATATTAAGTCGCCGGAGTTCTACTTTCAATT
GGGTCTATTGCCTTCGAGAGGTTTATTGCTTCATGGGCCGCCAGGCTGTG
GCAAAACCTTTCTTGCTCGTGCCATTAGCGGGCAACTAAAAATGCCTCTA
ATGGAAATTCCGGCCACAGAGCTAATTGGTGGCATCTCTGGTGAGTCGGA
AGAACGGATTCGCGAGGTCTTTGACCAGGCCATTGGCTACTCGCCTTGTG
TGCTTTTCATCGATGAAATCGACGCCATCGGAGGAAATCGTCAGTGGGCG
TCCAAGGATATGGAACGTCGCATTGTCTCGCAGCTGATAAGCAGTCTGGA
CAACCTGAAGGCCAACGAGTTTGGCCAATCAGTAGTCGTCATAGCGGCCA
CCACGCGTCCCGATGTCCTCGACCCTGGACTACGTCGCATCGGTCGCTTC
GATCACGAAATTGCCATACACATCCCATCGCGGAAAGAGCGGCGTGAAAT
CTTGCGCATCCAGTGCGAGGGCTTGTCCGTCGATCCCAAGCTAAATTATG
ATAAGATTGCAGAGCTAACACCGGGATATGTCGGTGCTGATCTAATGGCT
CTCGTAAGTCGTGCAGCTTCTGTGGCCGTAAAGCGTAGGTCCATGAAGAA
GTTCCGTGAACTGCACGCTGCTAGTGAAAAGAATATGACAACGGTCACTT
TGGATGACGACGAGCCCAGCGAGGACGCAGGTGAAACACCTGTGCCTGAT
TCAAAAGGTGAAGAAACTGCAAAAGATGCAGAGGCAGAACAAAAGGTAGA
TGGTGACAAGGAAACATCTGCTAAGGATAAATCAGAAGGCGACTCGCCAA
ATATTGAAACCCCCAAGAAAGCGACCAACGGCAACTCATCGATAAAGTCG
CCGCAGAAAACACCGAAGAAATCAGCGGAGAAACCAACTGACGCAGCGAT
GGATGTAGACAATGTTGCTCCCGAGGAGCCGAAAAAAGCCGTTGAGCAGG
AGGTGGATTCCTCCTCCTCCAACGACGAGTACTACGAACCCACACTGGCC
GAACTGACCAATTTTCTTGACAACCCCCCTGAAGAGTTCGCCGACCCAAA
CTTTTGCCTCACTCTCATTGATTTCGTAGATGCCATTAAGGTGATGCAGC
CTTCGGCCAAGCGCGAGGGCTTTATAACAGTACCAGATACCACTTGGGAT
GACATTGGTGCCCTAGAGAAAATTCGCGAAGAGCTTAAGTTGGCTGTCTT
GGCACCAGTTAAGTATCCAGAGATGCTGGAACGTCTTGGGCTGACAGCTC
CGTCAGGCGTTCTGCTATGCGGTCCGCCGGGTTGCGGCAAAACTCTTTTG
GCCAAGGCTATTGCCAATGAGGCTGGCATCAATTTCATATCGGTGAAGGG
CCCCGAACTTATGAACATGTATGTCGGCGAGAGCGAACGAGCTGTGCGTG
CCTGTTTCCAACGTGCCCGGAACTCTGCACCCTGCGTCATCTTCTTCGAC
GAGTTCGACTCCTTGTGCCCCAAGCGATCGGATGGTGGCGATGGTAATAA
TTCGGGCACTCGTATCGTTAACCAACTGCTGACCGAAATGGATGGCGTCG
AGGAGCGCAAGGGTGTATACATATTGGCGGCCACCAACAGACCGGATATC
ATTGATCCGGCCATCCTGCGACCGGGTCGCCTGGACACCATTTTGTACGT
GGGTTTCCCCGAGCAGAGCGAACGTACCGAGATTTTGAAGGCCACCACAA
AGAACGGAAAGCGTCCGGTTCTGGCCGATGATGTAGATCTCGATGAAATT
GCTGCCCAAACCGAGGGCTATACTGGCGCAGATTTGGCAGGATTGGTCAA
GCAGGCCTCCATGTTCTCCCTGCGACAATCTCTAAACAACGGCGACACAA
ATCTCGACGATTTGTGCGTACGCAGCCAGCATTTCCAGGAAGCTTTGCAG
CAACTTCGGCCCTCAGTTAACGAACAGGACCGCAAAATATACGATAAACT
GCGCCTGAAATATGCTGCACCAAGGGTACCCACTCTAAATGATAAGGCAA
GCTTTCTAGACCAT
BO30768.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:53:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| smid-RI | 2733 | CG8571-PI | 1..2730 | 17..2746 | 13650 | 100 | Plus |
| smid-RG | 2733 | CG8571-PG | 1..2730 | 17..2746 | 13650 | 100 | Plus |
| smid-RA | 2835 | CG8571-PA | 103..2832 | 17..2746 | 13650 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:53:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| smid-RI | 3080 | CG8571-RI | 119..2848 | 17..2746 | 13650 | 100 | Plus |
| smid-RG | 3313 | CG8571-RG | 352..3081 | 17..2746 | 13650 | 100 | Plus |
| smid-RA | 3170 | CG8571-RA | 209..2938 | 17..2746 | 13650 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:53:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 7383300..7384587 | 832..2119 | 6440 | 100 | Plus |
| 3L | 28110227 | 3L | 7382385..7382731 | 94..440 | 1735 | 100 | Plus |
| 3L | 28110227 | 3L | 7382894..7383234 | 492..832 | 1705 | 100 | Plus |
| 3L | 28110227 | 3L | 7384648..7384981 | 2119..2452 | 1670 | 100 | Plus |
| 3L | 28110227 | 3L | 7385048..7385275 | 2451..2678 | 1140 | 100 | Plus |
| 3L | 28110227 | 3L | 7382256..7382334 | 17..95 | 395 | 100 | Plus |
| 3L | 28110227 | 3L | 7385332..7385405 | 2673..2746 | 370 | 100 | Plus |
| 3L | 28110227 | 3L | 7382783..7382835 | 439..491 | 265 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 04:53:19 has no hits.
BO30768.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-13 10:26:34 Download gff for
BO30768.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| smid-RA | 205..2934 | 17..2748 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:20:44 Download gff for
BO30768.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| smid-RA | 209..2938 | 17..2748 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:39:26 Download gff for
BO30768.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| smid-RA | 209..2938 | 17..2748 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:39:26 Download gff for
BO30768.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 7385050..7385274 | 2453..2677 | 100 | -> | Plus |
| 3L | 7385337..7385405 | 2678..2748 | 97 | | Plus |
| 3L | 7382256..7382334 | 17..95 | 100 | -> | Plus |
| 3L | 7382387..7382731 | 96..440 | 100 | -> | Plus |
| 3L | 7382785..7382835 | 441..491 | 100 | -> | Plus |
| 3L | 7382894..7383234 | 492..832 | 100 | -> | Plus |
| 3L | 7383301..7384587 | 833..2119 | 100 | -> | Plus |
| 3L | 7384649..7384981 | 2120..2452 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:20:44 Download gff for
BO30768.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 7375356..7375434 | 17..95 | 100 | -> | Plus |
| arm_3L | 7375487..7375831 | 96..440 | 100 | -> | Plus |
| arm_3L | 7375885..7375935 | 441..491 | 100 | -> | Plus |
| arm_3L | 7375994..7376334 | 492..832 | 100 | -> | Plus |
| arm_3L | 7376401..7377687 | 833..2119 | 100 | -> | Plus |
| arm_3L | 7377749..7378081 | 2120..2452 | 100 | -> | Plus |
| arm_3L | 7378150..7378374 | 2453..2677 | 100 | -> | Plus |
| arm_3L | 7378437..7378505 | 2678..2748 | 97 | | Plus |
BO30768.pep Sequence
Translation from 16 to 2764
> BO30768.pep
MTRELMQKYPEYSRRKFGPFRQLVHQAFSIISESYNLDKVSSSEEDCVSE
DSEPPPTNSVMNNMMNSLYSQPRKPLAPKPISEPIDISSGDENEDDSNTK
TTNGDGVAAAAAPPPPTPAVQGSALKRLMEEVPEIAVAAKKVAKPNTIHV
SSSEAIQKLHQVVGNRAKNLSEDAVPRSKDHRNVPGLYQQLHQNQSRDRL
RKFKRDLEVQHPTESFRDIGGMDSTLKELCEMLIHIKSPEFYFQLGLLPS
RGLLLHGPPGCGKTFLARAISGQLKMPLMEIPATELIGGISGESEERIRE
VFDQAIGYSPCVLFIDEIDAIGGNRQWASKDMERRIVSQLISSLDNLKAN
EFGQSVVVIAATTRPDVLDPGLRRIGRFDHEIAIHIPSRKERREILRIQC
EGLSVDPKLNYDKIAELTPGYVGADLMALVSRAASVAVKRRSMKKFRELH
AASEKNMTTVTLDDDEPSEDAGETPVPDSKGEETAKDAEAEQKVDGDKET
SAKDKSEGDSPNIETPKKATNGNSSIKSPQKTPKKSAEKPTDAAMDVDNV
APEEPKKAVEQEVDSSSSNDEYYEPTLAELTNFLDNPPEEFADPNFCLTL
IDFVDAIKVMQPSAKREGFITVPDTTWDDIGALEKIREELKLAVLAPVKY
PEMLERLGLTAPSGVLLCGPPGCGKTLLAKAIANEAGINFISVKGPELMN
MYVGESERAVRACFQRARNSAPCVIFFDEFDSLCPKRSDGGDGNNSGTRI
VNQLLTEMDGVEERKGVYILAATNRPDIIDPAILRPGRLDTILYVGFPEQ
SERTEILKATTKNGKRPVLADDVDLDEIAAQTEGYTGADLAGLVKQASMF
SLRQSLNNGDTNLDDLCVRSQHFQEALQQLRPSVNEQDRKIYDKLRLKYA
APRVPTLNDKASFLDH
BO30768.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:22:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| smid-PI | 910 | CG8571-PI | 1..910 | 1..910 | 4672 | 100 | Plus |
| smid-PG | 910 | CG8571-PG | 1..910 | 1..910 | 4672 | 100 | Plus |
| smid-PA | 944 | CG8571-PA | 35..944 | 1..910 | 4672 | 100 | Plus |
| smid-PC | 943 | CG8571-PC | 35..943 | 1..910 | 4656 | 99.9 | Plus |
| smid-PH | 927 | CG8571-PH | 35..927 | 1..910 | 4562 | 98.1 | Plus |
