Clone BO30784 Report

Search the DGRC for BO30784

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:307
Well:84
Vector:pDNR-Dual
Associated Gene/Transcriptobst-G-RA
Protein status:BO30784.pep: Imported from assembly
Sequenced Size:869

Clone Sequence Records

BO30784.complete Sequence

869 bp assembled on 2012-03-05

> BO30784.complete
GAAGTTATCAGTCGACATGAAGCTATTTGGACTGCTCTGCGTAATGTTAG
TACTTCAAGAAAGTACTCTGGCTGTTGTACAAAACGGATTTGCGTTCAAG
ACGTCCTTATGCGAGGGTAAAAATGGTGGACTCTTGCCCATGTTTGGATC
CTGTAAAGGATATTACGTGTGTGCTGATGGAAACGCTGTGACCGGAACTT
GTGAAAAGAATACGTTGTTTAATCCTTTAACGTTGCACTGCGATGATCCT
GACAATGTGGATTGCATTTTCGATGGCAAGGATAATATTGTTGACGACAC
GTCAAGTTCTGAAAGCGACGAAGACGATGATGAGGAAATGGCCAAAACTG
ATCCTCCCGTTACTGTCAAAGCGACGAAAAAGCCGCGTCCTACAACCCTT
GACAAAATGTGTGCTGGCAAGAAGGATGGAGTGATGCTTACAAAGAACGG
GTCCTGCCAGGAATATTATGTCTGCAAAGCAAAAAAGCCCCATCTGCGCT
CTTGTCCTGACAAACAACATTTTAGTCCAACTCGTCGCATTTGCATGAAG
GCCTCAGAAGCCAAGTGTTCGGGTGGAACCCGAGAAAATAAAGAATCAGA
TGGTCCTGCCACCACGGGAGGAGTGTGTTCAGATGAAAAGGAAAACTCTC
TTGTTGCTCATCGCAGCGATTGTGGCAAGTTTATGCTCTGCAGCAACATG
ATGTTTTTGGTAATGGACTGCCCAACTGGCCTGCATTTCAATATAGCCAC
ATCACGATGCGATTATCCCAAAATTGCAAAATGCCAGACGAAGCTAAATG
AAAGCAAATCCAAGTCAAAGAAACCTGTGCGCAAGTCAAAAAAACGTCGA
TTCCAGCTTTCTAGACCAT

BO30784.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:00:21
Subject Length Description Subject Range Query Range Score Percent Strand
obst-G-RA 840 CG9781-PA 1..837 17..853 4185 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:00:23
Subject Length Description Subject Range Query Range Score Percent Strand
obst-G-RA 962 CG9781-RA 25..861 17..853 4185 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:00:19
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11952402..11953176 853..79 3860 99.9 Minus
3L 28110227 3L 11953228..11953293 82..17 330 100 Minus
Blast to na_te.dros performed on 2014-11-28 08:00:20 has no hits.

BO30784.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-05 16:15:41 Download gff for BO30784.complete
Subject Subject Range Query Range Percent Splice Strand
obst-G-RA 1..837 17..853 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:30:39 Download gff for BO30784.complete
Subject Subject Range Query Range Percent Splice Strand
obst-G-RA 25..861 17..853 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:08:51 Download gff for BO30784.complete
Subject Subject Range Query Range Percent Splice Strand
obst-G-RA 25..861 17..853 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:08:51 Download gff for BO30784.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11952402..11953172 83..853 100 <- Minus
3L 11953228..11953293 17..82 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:30:39 Download gff for BO30784.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11945502..11946272 83..853 100 <- Minus
arm_3L 11946328..11946393 17..82 100   Minus

BO30784.pep Sequence

Translation from 16 to 868

> BO30784.pep
MKLFGLLCVMLVLQESTLAVVQNGFAFKTSLCEGKNGGLLPMFGSCKGYY
VCADGNAVTGTCEKNTLFNPLTLHCDDPDNVDCIFDGKDNIVDDTSSSES
DEDDDEEMAKTDPPVTVKATKKPRPTTLDKMCAGKKDGVMLTKNGSCQEY
YVCKAKKPHLRSCPDKQHFSPTRRICMKASEAKCSGGTRENKESDGPATT
GGVCSDEKENSLVAHRSDCGKFMLCSNMMFLVMDCPTGLHFNIATSRCDY
PKIAKCQTKLNESKSKSKKPVRKSKKRRFQLSRP

BO30784.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:40:20
Subject Length Description Subject Range Query Range Score Percent Strand
obst-G-PA 279 CG9781-PA 1..279 1..279 1513 100 Plus
CG4835-PB 1224 CG4835-PB 397..629 35..248 222 26 Plus
CG7248-PA 796 CG7248-PA 541..762 29..256 198 25.7 Plus
Muc68D-PB 1514 CG6004-PB 1311..1512 28..255 193 26.3 Plus
Muc68D-PB 1514 CG6004-PB 1314..1447 132..265 186 29.4 Plus
CG4835-PB 1224 CG4835-PB 273..530 32..248 184 22.8 Plus
CG33986-PB 277 CG33986-PB 56..271 46..261 181 24.8 Plus
CG7248-PA 796 CG7248-PA 59..257 29..254 171 23 Plus
CG7248-PA 796 CG7248-PA 136..338 35..248 157 25.3 Plus
CG7248-PA 796 CG7248-PA 373..590 37..250 152 21.5 Plus