BO30792.complete Sequence
3688 bp assembled on 2012-05-15
GenBank Submission: KX797083
> BO30792.complete
GAAGTTATCAGTCGACATGGATGAATGCGACAACCCCGTCGTCGTCTCAC
TAGGAAAACTCGAATCACAGCAGCTAAACGAGGGGGTCGCCGAGCCGAGT
GCGGAAAATTCGGATCAGGAGCAGGCACTTTGTGACTACAAAGAGCCGAA
CATTGATGATAAGGAAGCGCTTATAGAGCAGGACCTTCACAAATCATCAG
TCGAGGAGGACGCAGCTAACGACGCGGAAGTCGAGGCAGTCATCATGGGA
CAGGCGGAGAGCAAGAAGCAGGGCAGCAAGTCGAGTCGCCGCCACCACAA
TGGCAACGGAAATAGTAATGGCAATCCCACGGAGGCGATGGAACAGAATC
AGACGGTGCACACCAAAGGCACCGCCATGTCCTTTGGTTTCCGCAAAAAG
CTCAATGGGACGCCCAAGAAGTTCAAGAAACTCCTGGAAGGCGGCGACAA
AAGCGCAACTCGCACAGACACAAAGGATGACAACGGAAATGCAGCTGTTC
CCATTCACTTCGAGAAAGTAGGCGCCGCCGCTGTACAGAAGGCTGGGACT
TTGGCGACAGGTGCGGCCGGCGGACGTTTCGGTTATCGTGGGGCGGTGCC
ACGCCCCTCTTCTGCAGGCTTCACTGCGCCCAGTGAAGATTCCGAATCGG
AATCGATGGCCAATGCCCAAAACAACATCAACAACAACAATAACAATAAT
AATGGACGTGGAACGGAGAATGGTCCGGTGTTGGTGAGCAATTTGAAACG
ACGCTCCAAGAGCGCACACGCCGGACGATCCGGCGATGGGGAGCCCAAAA
TAGCCCAGCCCAAGACGCTGACGTTCAACCTGAATCAGAACACCACCATC
GAGTACCAGCGGCGTCAGTTCTTCGGCGAGATCGCGGACGAAACGTCGGG
TTCCGGATCCGGATCGGGAACGGGATCGAGAGCTATGCAACCGAGATATA
ACTACAACAACCTGGCCAGCATGCATGCCAATGTCATAGTTCGCCCCACA
CCGCGACCCACTCCAGCCAGCTATGCCAAGTTCACACTGCAGACAGTGAG
CCTGCCCAGGCCGGAGTACCCGGTGGCCATCAGTTTGACAGCCACCACAC
CAACCACGCCCAGCAGCAGTGTGCAGTCACCTGTGCCCGCCCATTCGACA
GGTGCCAGGGCCAAGGACATCTCGACCAGTTCCAGGCAACATCCTTTGAC
CTCGGTCCATGTCCAACCACAGTCGCGTCATCTTGACCAGAAGAGCGTGA
AGCAGCTAACGAATAACTCCACACGACGAGGATTCTCCGGAAGCAGGGAG
ATTAGCGCCGATTCTGGGATAGCCAGCATGGACATGGCTTTGGACAGCAG
TTCGGGCAGCTCGGTGGGTTCCAAGAGGAGTCGGAGCAGACCAAGGAACC
TAAAGATGGTGATGAGTGGACGGCACACATTCGAGGTGCGCGATGCGGAT
GATCCGCCATCCAGTGAGTCCAACTCCTTTGTGGAACCACTGGCACTACC
AAAGTTACCCACTGATGGAAGTCAGAGTATTCCTCTGCCATTGCTGGGCT
TGGTGCGATCCAATACGGTGTTGAGTCGGGAGTCTTACGAGCGACGTCAG
GCGGAAACACCAGGATCCCAGGATCAGCAGGATTCGGAAAAACCCAAAAC
CAGCGGCTCCGATGAAAGCGAGAGTGTGGATGAAGAGAAACTCTACTTGG
ACTCGTCCACCTCCGAAAAGAGTGCCAAACATCAGAGCCAATCGTCAGTG
GCTTCCACTTGGCGTCACCAGGCGGGTGAATCTCTGGCCGCCCAGGATTG
CAGCAGCATGAGCATGAGCATCAGTAGTGACACCCATGCTCCGGAAAATC
CGCGCGATAATGACAAGGAGGAGGACATGTCCTTGGGTCTGGATGAGATC
AGTCTGATCAACACTGACATGCAGTTTAGCACAATCTCTTCAATGACGGA
AACTCCACCCAAAGTGGGTCAGGAGTCCCTGCTCAATCTTCACCTGGTGG
ACAATCGGGAGGCAGGCACCTCGCGTCCCCGCTCCTTTAACAATGCTCTT
AATGAATCCAAGTTTGCCGAGCTGGCTCTGGCCAGTAGTAGTTGCCTCCT
GTTGGATGATGAGACATCGCCCACAGACAGTTTGGTCAGCAGCACCGAAG
ATTCCGAGGAGGCTGGTGGCAAGTTGCAAAAGCACAAGCTCAATGAGGAG
CGTCAGCAGAAGGACATCGATGACATCGACATAGATGATATATCACCGGT
TCTCGAACTGGATCTGGATCCTCCAGGTGGACGAAGTCCCATTTCACCCG
GCACTCCCACGCATGCATCCCATTCCCTTTCTTTGGGTTCGGATTGCGGA
AATCTTATTGATGATGAGATCGCCGATCAGCCAGCATTGCTATGCAACAG
TGAAGCCCATGAGGTGGCCACCGATACGCCCACATTGATGGAAACCCTCA
CGCACACCCAAACAGGATCCTTGAGATCCTTGAAGAGTCAGTCGAAGGCA
CGTACCGCTCTGCAGCAGGCCATCGAGTTGAGTTTAAGGACTCCGGCAGC
GGTACGAAAGGCAGTTATGGATCGAGCCGAATCCTTGGATACTCTATCGC
CATGCGAATCCATTTGCTCCGATGACCTGATGATGGACTTCGATATGAAC
AGCAGCGTGGACTCGATCGATCACATGGCCAGTTCAACGGGACGCAGTCG
CAGTGGCTCGGATCTTCACAAGATTGGTGGTCAGGATATCGATCCCATGC
AGGCGGAAACTGAGGCGGAACTTCTATCCGAGTTGGAACGCAGGGGCAGT
GATGTGATGAAGGAGCTCAATACTTTGCTGCGAGGAAGGAGGCAGCGCGG
AGGACCAAGGGAGAGGATTAGCGCCCAACTGCCTGCGCGTGCCACCAGAT
TGCTGAACCGCTCACGTCTGCAGGACCAACAACTCACCGGCAACGATTCG
GATAACAGCTTGAGGTCCTCCCACAGCGGCGGAGCTTCGGCGGCGGCCAG
GAAGCGAAGCACGACCAACTCAAGGACCTCGTCGGGTTCCACGGCCAGCC
TGCCTCGTCAGCGTCATCTGCAGCAGCAGCATCTGGGATCGGGTGGCGGA
GCAGGAGCGGGTGGTGGAGGTGGAGGTGGTGGAGCCACTGCGTCCGGTAC
ATCCACCCAGAGGTGCGGGGGAGAGCTGCACAGCTCGTCGGACGATCTAA
TGTTGTATGACAAGTCCTTCCGCAATGCGATGATCCAGGATGTGCTGCAG
TTCAAGAAGCAGCTGCTCCGACTGCGGCGAATACTCCAGGAGACGGAAAC
GCTCAATCCCTTCGAGAACGATAACGTCCAGCTGTTCGCCGCCTGCGGAT
TGGATAGCAAGCAATTGAATGACATCGATTTGGCCAGCCTAACCTCGTCC
ACGACGGAGGATCCGCTACAGGAGCTAACGGATCTACGTAGACAGGGTCA
AGTGGACGATCGTGATCGCACCATTCGCCTGCAGCGCGATCTCATCGAGC
AACTGGAGGCCGAGAAGAGGCAGAAGGCTTCGCATGGACCGGGATCTGGC
GCGGATCCGGGCAAGGAGCTAATCAGCATGGCCACCCAAACGGAGCGGAC
ACGACCACTTGCCATTGGTGCGGAGGGTTTGTCCAGACTACAATTTGGGG
AGCAACAGAGTCCCAAGAAGGCAAGCTTTCTAGACCAT
BO30792.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:21:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42268-RH | 3657 | CG42268-PH | 1..3654 | 17..3670 | 18270 | 100 | Plus |
| CG42268-RF | 4179 | CG42268-PF | 1..3636 | 17..3637 | 17920 | 99.6 | Plus |
| CG42268-RM | 3603 | CG42268-PM | 1..3598 | 17..3599 | 17730 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:21:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42268-RH | 5383 | CG42268-RH | 455..4108 | 17..3670 | 18270 | 100 | Plus |
| CG42268-RF | 5367 | CG42268-RF | 455..4090 | 17..3637 | 17920 | 99.6 | Plus |
| CG42268-RM | 5329 | CG42268-RM | 455..4052 | 17..3599 | 17730 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:21:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9748126..9749075 | 1937..988 | 4750 | 100 | Minus |
| 3L | 28110227 | 3L | 9747135..9748068 | 2871..1938 | 4670 | 100 | Minus |
| 3L | 28110227 | 3L | 9738893..9739315 | 3292..2870 | 2115 | 100 | Minus |
| 3L | 28110227 | 3L | 9749518..9749769 | 743..492 | 1260 | 100 | Minus |
| 3L | 28110227 | 3L | 9750053..9750300 | 494..247 | 1240 | 100 | Minus |
| 3L | 28110227 | 3L | 9749195..9749438 | 987..744 | 1220 | 100 | Minus |
| 3L | 28110227 | 3L | 9750891..9751122 | 248..17 | 1160 | 100 | Minus |
| 3L | 28110227 | 3L | 9737129..9737284 | 3598..3443 | 780 | 100 | Minus |
| 3L | 28110227 | 3L | 9738125..9738280 | 3446..3291 | 780 | 100 | Minus |
| 3L | 28110227 | 3L | 9736928..9736966 | 3636..3598 | 195 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 11:21:10 has no hits.
BO30792.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-15 14:08:17 Download gff for
BO30792.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42268-RH | 455..4108 | 17..3672 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:20:34 Download gff for
BO30792.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42268-RH | 455..4108 | 17..3672 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:41:07 Download gff for
BO30792.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42268-RH | 455..4108 | 17..3672 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:41:07 Download gff for
BO30792.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9749195..9749438 | 744..987 | 100 | <- | Minus |
| 3L | 9749518..9749766 | 495..743 | 100 | <- | Minus |
| 3L | 9750053..9750299 | 248..494 | 100 | <- | Minus |
| 3L | 9750892..9751122 | 17..247 | 100 | | Minus |
| 3L | 9735969..9735992 | 3637..3661 | 96 | <- | Minus |
| 3L | 9736928..9736965 | 3599..3636 | 100 | <- | Minus |
| 3L | 9737129..9737281 | 3446..3598 | 100 | <- | Minus |
| 3L | 9738126..9738278 | 3293..3445 | 100 | <- | Minus |
| 3L | 9738893..9739313 | 2872..3292 | 100 | <- | Minus |
| 3L | 9747135..9748068 | 1938..2871 | 100 | <- | Minus |
| 3L | 9748126..9749075 | 988..1937 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:20:34 Download gff for
BO30792.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9742295..9742538 | 744..987 | 100 | <- | Minus |
| arm_3L | 9729069..9729092 | 3637..3661 | 96 | <- | Minus |
| arm_3L | 9730028..9730065 | 3599..3636 | 100 | <- | Minus |
| arm_3L | 9730229..9730381 | 3446..3598 | 100 | <- | Minus |
| arm_3L | 9731226..9731378 | 3293..3445 | 100 | <- | Minus |
| arm_3L | 9731993..9732413 | 2872..3292 | 100 | <- | Minus |
| arm_3L | 9740235..9741168 | 1938..2871 | 100 | <- | Minus |
| arm_3L | 9741226..9742175 | 988..1937 | 100 | <- | Minus |
| arm_3L | 9742618..9742866 | 495..743 | 100 | <- | Minus |
| arm_3L | 9743153..9743399 | 248..494 | 100 | <- | Minus |
| arm_3L | 9743992..9744222 | 17..247 | 100 | | Minus |
BO30792.pep Sequence
Translation from 16 to 3688
> BO30792.pep
MDECDNPVVVSLGKLESQQLNEGVAEPSAENSDQEQALCDYKEPNIDDKE
ALIEQDLHKSSVEEDAANDAEVEAVIMGQAESKKQGSKSSRRHHNGNGNS
NGNPTEAMEQNQTVHTKGTAMSFGFRKKLNGTPKKFKKLLEGGDKSATRT
DTKDDNGNAAVPIHFEKVGAAAVQKAGTLATGAAGGRFGYRGAVPRPSSA
GFTAPSEDSESESMANAQNNINNNNNNNNGRGTENGPVLVSNLKRRSKSA
HAGRSGDGEPKIAQPKTLTFNLNQNTTIEYQRRQFFGEIADETSGSGSGS
GTGSRAMQPRYNYNNLASMHANVIVRPTPRPTPASYAKFTLQTVSLPRPE
YPVAISLTATTPTTPSSSVQSPVPAHSTGARAKDISTSSRQHPLTSVHVQ
PQSRHLDQKSVKQLTNNSTRRGFSGSREISADSGIASMDMALDSSSGSSV
GSKRSRSRPRNLKMVMSGRHTFEVRDADDPPSSESNSFVEPLALPKLPTD
GSQSIPLPLLGLVRSNTVLSRESYERRQAETPGSQDQQDSEKPKTSGSDE
SESVDEEKLYLDSSTSEKSAKHQSQSSVASTWRHQAGESLAAQDCSSMSM
SISSDTHAPENPRDNDKEEDMSLGLDEISLINTDMQFSTISSMTETPPKV
GQESLLNLHLVDNREAGTSRPRSFNNALNESKFAELALASSSCLLLDDET
SPTDSLVSSTEDSEEAGGKLQKHKLNEERQQKDIDDIDIDDISPVLELDL
DPPGGRSPISPGTPTHASHSLSLGSDCGNLIDDEIADQPALLCNSEAHEV
ATDTPTLMETLTHTQTGSLRSLKSQSKARTALQQAIELSLRTPAAVRKAV
MDRAESLDTLSPCESICSDDLMMDFDMNSSVDSIDHMASSTGRSRSGSDL
HKIGGQDIDPMQAETEAELLSELERRGSDVMKELNTLLRGRRQRGGPRER
ISAQLPARATRLLNRSRLQDQQLTGNDSDNSLRSSHSGGASAAARKRSTT
NSRTSSGSTASLPRQRHLQQQHLGSGGGAGAGGGGGGGGATASGTSTQRC
GGELHSSSDDLMLYDKSFRNAMIQDVLQFKKQLLRLRRILQETETLNPFE
NDNVQLFAACGLDSKQLNDIDLASLTSSTTEDPLQELTDLRRQGQVDDRD
RTIRLQRDLIEQLEAEKRQKASHGPGSGADPGKELISMATQTERTRPLAI
GAEGLSRLQFGEQQSPKKASFLDH
BO30792.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:35:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42268-PH | 1218 | CG42268-PH | 1..1218 | 1..1218 | 6179 | 100 | Plus |
| CG42268-PF | 1392 | CG32046-PA | 1..1223 | 1..1224 | 6108 | 98.5 | Plus |
| CG42268-PL | 1398 | CG42268-PL | 1..1229 | 1..1224 | 6102 | 98 | Plus |
| CG42268-PM | 1200 | CG42268-PM | 1..1199 | 1..1194 | 6043 | 99.6 | Plus |
| CG42268-PD | 1477 | CG42268-PD | 167..1308 | 77..1224 | 5735 | 98.7 | Plus |
