BO30795.complete Sequence
3505 bp assembled on 2012-04-30
GenBank Submission: KX797452
> BO30795.complete
GAAGTTATCAGTCGACATGCATGCATCCTCCGCGGCGGCCACTGCACTTG
TGGAGTACTCGGACGTCAGCTCAGAGGACTTCTCGGATCAGGAGGCAGGG
GACTTGGATGCGGACGCCGGCAAGGGTGCCGGAAACATCAAAAAACCGAA
GCCAGCTCCGGATAATCAGTTCTCCAAAGGTCGTCTTGATGCCAAGCCCG
ATAAAGAGGGTTATGATAACTACAGAAGTAGAAGGGCGGAAGACTCAAGC
GACCCAGTGGCGGCCGGATCGAGGCAAACGTCTAGCAGCGAGGCCACGAA
TCCGCGGGAGGAACCTTCGCAGGCATCCAACACCTCGAAGGACGAGCTGT
GGGGCAGAGAGATATACATGTCCAGCGATTCTATCGACACCGATGAGCTG
GAGGCGGAAATGAAGCGGCAGAAGCGCAAAAAGCAGAAAAAGGAAAAACA
CAAACACAAGTCGAAGAAAAAGTCCAAGAAGCGCAAGAAGAAGCGGGCCA
AGTCATACTCCAGCATCGATTCGATGTCAGACAATGACATCAATGCCTTA
CTGGACCGGCGCTATACTCCGCCGACGGCTCCTAGCAAGAGCAACGAACG
GACGGTTAGCGCTGCGCCGTCCTCCTTCACCCCACACAACCTCAAGGAGA
GCAGTTCGCCAGCCACTCCACCGCCAGTGCGTCGCCCGAATACGAACAGC
AACTACTACGGCGAGTCGTCCCTGGAGACGGCCAACTCTGCACTGGGAAG
CAACCTGCAGGTCACAGTTACGAATAAGCAGTCGATCAGCAACCGGCTTC
GTTCTCCTCCTCCGTCCTCCCGCTCCAGCGGCAACGGGCCGAGGTTTGGA
AACTCCCCGCGAACTCCACCGCCCTCTCACTACAGCTCCAGTGGCGGAGG
AGGGGTTGGCAGTGGGTCAGTGGTCCGCGATTCACGCAGCTCCCGCTATG
TAAATAGTCCCCACAAAGAGGATGTAAGTGCGCATCACCGCTCTAGCCAC
GATCACGGATATCAGGGACGTTACTCTGGTGCTGGGTCGAGCAGTCACGA
TACCAGGAAGGTGAAACGACTGTCGCCGGAGCTGGACCGCTACAACCATC
AGCCAAGCACGCCACCCCACAAGCGTCGGAAGTTTAGCGATGGCAGGGAA
GTGGGCCTCGGAAACTTTGAGCACAGTAGACACCACTCTGGAAAGTACGA
ACGATACAGCAGAGATCGATATTCTAGGCGGTCATCAAGGAGCCCCAGTG
TGCAGCACTCACGAAGTCGGCAATCTCCCAGCGGTGGCCTGTCAAGTGGT
TCGAACGCGTTTCGCCATGGTGGCAGTCACAAACACAAGTATGGGACCAC
TGTTAGCTCGACGCCGTCGCATACGACGAGGACCTCAAAACGCGCTTCGG
GAACTGGTACCTCTGGCGATCGCTACTCAAGGTCGCCCAGAACAAGTTCG
CGGTACATGGAGTCATCACCCCCATCGCCAGTCGGAGCTTCCGGTTCGCA
TCACTATCATCATCGCCGTTCGCCAAGGATGCGCCAGAGGACCAGAGGCG
ACAGTCGTCGCCGGTCGCCCAGTTCGGCCAGCAGCGAAAGTTCTGCCTCT
CGCAGCCGATCGCCAACGTCAAGAGATCTAAAGCACAAGCGCGAAGAGTA
CATTAAGAAGATCAGTGAGACTAGCCTATTTGCCGAGCTGGTAAAGGATC
GTCACAAAAGGCAGAAGGCGCTGAAGGAAATCATTGAGCGGCAAGAGGAG
AACAGCAATAGCAACAGCAACGGTGCACTGACTATTAACGACAACAGTTC
CTCCGTGGATGGCAACACACCCAACGCGGCTGATGGCCGATCTGCCCCTG
GAAGTGGAACACCAGCAGCGGCGTCAACAACTTCCAATGGGCTTCAAGCT
TTGGGTAGCAAGCCCGATCTGGACCTCAACAACATTCCCATGCCAAACAA
GCAGAACGATTCTGTGGTTTCGAATCCGGCTTCAAACGCCGATGTTCCGG
ACAGTGTCGCGCAGTTGAAGCAACCTTTGCTGGTGCCACCGTTCTCGGCT
AGTAAGAACAACATAAAACCGAAGAGCCTGACTTCTTTGCCGCTGCCGCC
GGGTATGAATGTGCTCGACTTGGCCGGTGCAAGGTCTCCCTCTCCGGGGC
AAAAGAAGGAATCGGACGAAAAGAACGTTACTTCAAGCGGCAGCGCCAAC
AAGAGCGTGCTCAATCTTCCTATGCCGCCAGTAATTCCCGGCAGCGAAGA
GCTTAGTGGCGATGATGATGTTATCGACAGTCCTGAAGACTTTGATGCAC
CCGCTGTTGGCACTGTGCACGGTCACGGTGGTGGGCCAGGGACAACTCGT
CAGCGCCCAGTGATACTCAACCGTCGTGACTCGCGAAACAACGTACGCGA
CTGGGGCGAGCGCTGTGTGGATGTTTTTGAGATGATTGCGCAAATAGGGG
AAGGAACTTACGGACAGGTTTACAAGGCGCGGGATCATCATACCAATGAC
ATGGTAGCACTGAAGAAGGTTCGGCTGGAGCACGAGAAGGAGGGCTTTCC
CATTACAGCTGTTCGTGAAATCAAAATTCTGAGACAACTTAACCATCGCA
ATATAGTCAACCTGCATGAAATTGTGACGGACAAGCAGGATGCTGTGGAG
TTCCGTAAAGACAAGGGATCCTTCTACTTGGTGTTTGAGTACATGGATCA
CGACTTGATGGGTCTGCTGGAGTCTGGCATGGTCGACTTCAACGAGGAAA
ACAACGCAAGCATTATGAAGCAGCTCTTGGACGGCCTCAACTACTGCCAC
AAAAAGAATTTTCTGCATCGAGACATCAAGTGCTCGAACATTTTAATGAA
CAACAGGGGTAAAGTAAAACTAGCTGACTTTGGGCTGGCACGACTATACA
ATGCGGACGATCGGGAACGCCCCTACACGAACAAAGTAATTACCTTGTGG
TATCGTCCTCCTGAGCTTTTGCTGGGTGAGGAGCGTTACGGCCCGTCGAT
AGACGTGTGGTCCTGCGGGTGCATCCTCGGCGAACTCTTTGTGAAGCGGC
CCCTGTTCCAGGCTAATGCGGAAATGGCGCAGCTTGAAACGATATCAAAG
ATCTGTGGATCCCCGGTTCCTGCCGTGTGGCCGAATGTAATTAAGCTGCC
TCTGTTCCACACTCTCAAACAAAAGAAGACGCACCGCCGCCGTCTACGAG
AAGACTTTGAATTCATGCCAGCCCCTGCACTTGATCTGCTGGACAAAATG
CTTGATTTAGATCCGGACAAGCGCATCACAGCAGAAGACGCGCTCCGGTC
ACCGTGGCTAAGGAAAATCAACCCCGACGAAATGCCAACGCCACAATTGC
CCACATGGCAGGACTGCCATGAGCTTTGGAGTAAGAAGCGCCGTCGGCAG
ATGCGGGAGCAACAGGAGTCGCTTCCTCCTACGGTGATAGCCTCGACCAA
ATACCAACAGCATGGAGCAACCATGGTGGGGGATGCTGCAAGCTTTCTAG
ACCAT
BO30795.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:31:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cdk12-RC | 3474 | CG7597-PC | 1..3471 | 17..3487 | 17250 | 99.8 | Plus |
| Cdk12-RA | 3474 | CG7597-PA | 1..3471 | 17..3487 | 17250 | 99.8 | Plus |
| Cdk12-RB | 3474 | CG7597-PB | 1..3471 | 17..3487 | 17250 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:31:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cdk12-RC | 4244 | CG7597-RC | 396..3866 | 17..3487 | 17250 | 99.8 | Plus |
| Cdk12-RA | 4772 | CG7597-RA | 396..3866 | 17..3487 | 17250 | 99.8 | Plus |
| Cdk12-RB | 4530 | CG7597-RB | 682..4152 | 17..3487 | 17250 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:31:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21519105..21520340 | 1234..2469 | 6075 | 99.4 | Plus |
| 3L | 28110227 | 3L | 21517843..21518699 | 223..1079 | 4285 | 100 | Plus |
| 3L | 28110227 | 3L | 21521079..21521555 | 2854..3330 | 2385 | 100 | Plus |
| 3L | 28110227 | 3L | 21520399..21520791 | 2465..2857 | 1965 | 100 | Plus |
| 3L | 28110227 | 3L | 21517582..21517790 | 17..225 | 1045 | 100 | Plus |
| 3L | 28110227 | 3L | 21518757..21518918 | 1079..1240 | 810 | 100 | Plus |
| 3L | 28110227 | 3L | 21521622..21521778 | 3331..3487 | 785 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 12:31:57 has no hits.
BO30795.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-30 10:04:07 Download gff for
BO30795.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7597-RA | 395..3865 | 17..3489 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:44:30 Download gff for
BO30795.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cdk12-RB | 682..4152 | 17..3489 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:06:13 Download gff for
BO30795.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cdk12-RB | 682..4152 | 17..3489 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 13:06:13 Download gff for
BO30795.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21517582..21517790 | 17..225 | 100 | -> | Plus |
| 3L | 21517846..21518699 | 226..1079 | 100 | -> | Plus |
| 3L | 21518758..21518917 | 1080..1239 | 100 | -> | Plus |
| 3L | 21519111..21520338 | 1240..2467 | 99 | -> | Plus |
| 3L | 21520402..21520790 | 2468..2856 | 100 | -> | Plus |
| 3L | 21521082..21521555 | 2857..3330 | 100 | -> | Plus |
| 3L | 21521622..21521778 | 3331..3489 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:44:30 Download gff for
BO30795.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21510682..21510890 | 17..225 | 100 | -> | Plus |
| arm_3L | 21510946..21511799 | 226..1079 | 100 | -> | Plus |
| arm_3L | 21511858..21512017 | 1080..1239 | 100 | -> | Plus |
| arm_3L | 21512211..21513438 | 1240..2467 | 99 | -> | Plus |
| arm_3L | 21513502..21513890 | 2468..2856 | 100 | -> | Plus |
| arm_3L | 21514182..21514655 | 2857..3330 | 100 | -> | Plus |
| arm_3L | 21514722..21514878 | 3331..3489 | 98 | | Plus |
BO30795.pep Sequence
Translation from 16 to 3505
> BO30795.pep
MHASSAAATALVEYSDVSSEDFSDQEAGDLDADAGKGAGNIKKPKPAPDN
QFSKGRLDAKPDKEGYDNYRSRRAEDSSDPVAAGSRQTSSSEATNPREEP
SQASNTSKDELWGREIYMSSDSIDTDELEAEMKRQKRKKQKKEKHKHKSK
KKSKKRKKKRAKSYSSIDSMSDNDINALLDRRYTPPTAPSKSNERTVSAA
PSSFTPHNLKESSSPATPPPVRRPNTNSNYYGESSLETANSALGSNLQVT
VTNKQSISNRLRSPPPSSRSSGNGPRFGNSPRTPPPSHYSSSGGGGVGSG
SVVRDSRSSRYVNSPHKEDVSAHHRSSHDHGYQGRYSGAGSSSHDTRKVK
RLSPELDRYNHQPSTPPHKRRKFSDGREVGLGNFEHSRHHSGKYERYSRD
RYSRRSSRSPSVQHSRSRQSPSGGLSSGSNAFRHGGSHKHKYGTTVSSTP
SHTTRTSKRASGTGTSGDRYSRSPRTSSRYMESSPPSPVGASGSHHYHHR
RSPRMRQRTRGDSRRRSPSSASSESSASRSRSPTSRDLKHKREEYIKKIS
ETSLFAELVKDRHKRQKALKEIIERQEENSNSNSNGALTINDNSSSVDGN
TPNAADGRSAPGSGTPAAASTTSNGLQALGSKPDLDLNNIPMPNKQNDSV
VSNPASNADVPDSVAQLKQPLLVPPFSASKNNIKPKSLTSLPLPPGMNVL
DLAGARSPSPGQKKESDEKNVTSSGSANKSVLNLPMPPVIPGSEELSGDD
DVIDSPEDFDAPAVGTVHGHGGGPGTTRQRPVILNRRDSRNNVRDWGERC
VDVFEMIAQIGEGTYGQVYKARDHHTNDMVALKKVRLEHEKEGFPITAVR
EIKILRQLNHRNIVNLHEIVTDKQDAVEFRKDKGSFYLVFEYMDHDLMGL
LESGMVDFNEENNASIMKQLLDGLNYCHKKNFLHRDIKCSNILMNNRGKV
KLADFGLARLYNADDRERPYTNKVITLWYRPPELLLGEERYGPSIDVWSC
GCILGELFVKRPLFQANAEMAQLETISKICGSPVPAVWPNVIKLPLFHTL
KQKKTHRRRLREDFEFMPAPALDLLDKMLDLDPDKRITAEDALRSPWLRK
INPDEMPTPQLPTWQDCHELWSKKRRRQMREQQESLPPTVIASTKYQQHG
ATMVGDAASFLDH
BO30795.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:25:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cdk12-PC | 1157 | CG7597-PC | 1..1157 | 1..1157 | 6061 | 100 | Plus |
| Cdk12-PA | 1157 | CG7597-PA | 1..1157 | 1..1157 | 6061 | 100 | Plus |
| Cdk12-PB | 1157 | CG7597-PB | 1..1157 | 1..1157 | 6061 | 100 | Plus |
| Cdk9-PA | 404 | CG5179-PA | 50..387 | 804..1136 | 719 | 44.6 | Plus |
| cdc2rk-PA | 387 | CG1362-PA | 48..351 | 799..1108 | 601 | 39.2 | Plus |
