Clone BO30806 Report

Search the DGRC for BO30806

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:308
Well:6
Vector:pDNR-Dual
Associated Gene/TranscriptCG30285-RA
Protein status:BO30806.pep: Imported from assembly
Sequenced Size:370

Clone Sequence Records

BO30806.complete Sequence

370 bp assembled on 2012-03-05

GenBank Submission: KX799828

> BO30806.complete
GAAGTTATCAGTCGACATGAGATCGTGTACTTTACTTGTTTTCATAGTGA
GCACGCTGTTGTTTGCCGTGACAAATGCGCAGCAGAATTATGATGGAAGA
AATGGTCCCCATGAGTTCGGCACACCTGGAAACGGCATTTACATACGGGG
TCAGAACGAAGGACCCTACACAGTGCCCGAAATGGGAGGAACGTTCCAAA
ACTCACCCTCAAGTGGGCAGCATTCCTACACCGATGAGCACGGAAATACT
TACACCCATTCCTCAACGGCAACTGTCACAAGTTTGGCCTATTCAACCTT
CGGTTTCAGCATGGGCGGCGTTCTCATTTTTCTAATTAGTTTAATAACCA
TTGCAAGCTTTCTAGACCAT

BO30806.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:11:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG30285-RA 339 CG30285-PA 1..336 17..352 1680 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:11:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG30285-RA 575 CG30285-RA 35..371 16..352 1685 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:11:35
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21688107..21688391 352..68 1425 100 Minus
2R 25286936 2R 21688459..21688511 68..16 265 100 Minus
Blast to na_te.dros performed on 2014-11-28 05:11:36 has no hits.

BO30806.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-05 16:50:39 Download gff for BO30806.complete
Subject Subject Range Query Range Percent Splice Strand
CG30285-RA 12..347 17..354 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:29:49 Download gff for BO30806.complete
Subject Subject Range Query Range Percent Splice Strand
CG30285-RA 36..371 17..354 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:05:51 Download gff for BO30806.complete
Subject Subject Range Query Range Percent Splice Strand
CG30285-RA 36..371 17..354 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:05:51 Download gff for BO30806.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21688105..21688390 69..354 99 <- Minus
2R 21688459..21688510 17..68 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:29:49 Download gff for BO30806.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17575610..17575895 69..354 99 <- Minus
arm_2R 17575964..17576015 17..68 100   Minus

BO30806.pep Sequence

Translation from 16 to 370

> BO30806.pep
MRSCTLLVFIVSTLLFAVTNAQQNYDGRNGPHEFGTPGNGIYIRGQNEGP
YTVPEMGGTFQNSPSSGQHSYTDEHGNTYTHSSTATVTSLAYSTFGFSMG
GVLIFLISLITIASFLDH

BO30806.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:49:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG30285-PA 112 CG30285-PA 1..112 1..112 591 100 Plus
CG33470-PC 257 CG33470-PC 1..85 1..85 254 51.8 Plus
CG33470-PA 257 CG33470-PA 1..85 1..85 254 51.8 Plus
IM10-PC 257 CG18279-PC 1..85 1..85 254 51.8 Plus
IM10-PA 257 CG18279-PA 1..85 1..85 254 51.8 Plus