BO30823.complete Sequence
1789 bp assembled on 2012-04-11
GenBank Submission: KX794640
> BO30823.complete
GAAGTTATCAGTCGACATGACGGAGCACCAGGCCGAGGAGCAGGCGGACA
CGCCGCCCACCAAGGTCAAGGCCACGCCCACACCCACCCCGAGTGGAAAG
TTCAAGGACGCGAAGGAAGACGCCTTCCTGTCCACATCGCCGGACAGCGC
CAACGGCGATGCCCAACACAAGCTGCCAGCGGACCAGCTGGCCATGTCCT
CCAGTGCGCATCCCCAGCAGGCGGGCCAAGCCCGCCCGCTCATCCTGCAA
GCCTTCCACCGCTGCTCCTCGCCAGAACAGTGCGTCACGCTGCACGACAT
CCTGGACTCCTTTAAGGCGCCGCTCTCCGAGGACCAGGCCTGGGCCCTGA
TCCACCAGTTCGCCGGGCTCTACCACCAGGTGGCCGTACAAGCGCACACC
TGTGCCGCGGACTACGAGGCCGCCCTGCCCACCGGATTCGAGCTGCACTT
CCATCGCGACGGCAGCGTCCACTTCTCCGGCCCGGATCAGCTGACGCCTA
AGGAGCAACTGCAGCAGGAGCAGATCCCCCTCCCCCCGCAGCACGACGTG
ATTGTGGATCAGCCGGACCACAGCGCCAGCAGCAGCGGCGACAGCAGCGT
CATCAACAGAGCGTTCGACAACAGCAATCACCACCACCACCATCAACATC
ATCACCCGCCGCTCGTCGTCTCGCATAGAAAGATTATCAGCGAACTGGCG
GAAATCGTCTACACCGCCTTGGATTACAATCTGCCGGAGGACGAGGAGTG
CCAAGTGTCACAGGAGCTGGAGAATCTGTTCAACTTTATGACGGCAGATG
AGACAGACGACGATTGCATTGACGAGGGCATCGACGAGGGCGACAAGCGC
TGGGACGACGAATCCGAGGAGGAGCGCAACGATACCAAAGAACTAGAGCA
CATAATCGAGACCTGCAGAAATCACATAAAAACCACCCTGCCTGAGAACC
ACTATAGAGCTGTCTGCAGAGCCCTCGTGACGGAGACCATAGAGCTCCGA
GTATTTCTGCAGCAGGTCCTGAACAATGCAGGTGCCGAGAAACTGATCAA
GGCGTCGGAATCATCGGCCACCACGCAACAAGAACTGGCGAAGCTGGGCT
TCAACGACTGGGCACGCTTCTGGGTGCAGGTGATCGACGAACTGCGACGG
GGAGTGCGGCTGAAGAAGAGCAACCACGAGCGCACTCCCATCGAATATGA
GCTGACACCCTACGAAATACTCATGGGCGACATCCGAGCCAAAAAGTATC
AGTTGCGCAAGGTGATGGTCAACGGAGATATTCCGCCGCGCGTCAAGAAA
GATGCCCACGCCATGATCTTGGAGTTCATCAGGTCACGGCCGCCGCTGAA
GAAGGCCAGCGATCGCCAATTGGGCCCGCCGCGCATGTGCGAGCCTTCTC
CGCGGGAGCAGCTCATGGAGTCCATACGGAAGGGGAAGGAGCTCAAGCAG
ATCACCCCGCCAGAAGCACCGACCCTCAGGGAAAGGGTGCTTCCAAGTGC
AAACTCCACGCTGTCACGATCCAGACAGCGGCTCATCAAAGTGGACTTCT
CCAAGTTTCAGGACGACGATCTCTTCTACGATGAGAACAGCATCAGCAGC
TCCCACTCCACAGCGGCCACCCACCAGCATCATCCACATTTCGCCGAGAT
GCACCGCTGCTCGCAGCCCAAGATGCCGCCGTATCCATTCGGTGGCTACA
TGGTGCCCAGTCAGGCACGACAAGATTGCCGGGAGACGGCGTCGCTGATG
CGGCCCCGACGCACAAGTATTGCAAGCTTTCTAGACCAT
BO30823.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:30:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| spir-RD | 1758 | CG10076-PD | 1..1755 | 17..1771 | 8775 | 100 | Plus |
| spir-RE | 2973 | CG10076-PE | 1..1750 | 17..1766 | 8750 | 100 | Plus |
| spir-RG | 1761 | CG10076-PG | 1..1758 | 17..1771 | 8710 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:30:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| spir-RD | 2666 | CG10076-RD | 602..2356 | 17..1771 | 8775 | 100 | Plus |
| spir-RE | 4791 | CG10076-RE | 602..2351 | 17..1766 | 8750 | 100 | Plus |
| spir-RG | 2669 | CG10076-RG | 602..2359 | 17..1771 | 8710 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:30:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 20311820..20312414 | 17..611 | 2975 | 100 | Plus |
| 2L | 23513712 | 2L | 20343740..20343949 | 1559..1768 | 1050 | 100 | Plus |
| 2L | 23513712 | 2L | 20339978..20340112 | 1353..1487 | 675 | 100 | Plus |
| 2L | 23513712 | 2L | 20339244..20339375 | 1111..1242 | 660 | 100 | Plus |
| 2L | 23513712 | 2L | 20334079..20334198 | 681..800 | 600 | 100 | Plus |
| 2L | 23513712 | 2L | 20336285..20336404 | 909..1028 | 600 | 100 | Plus |
| 2L | 23513712 | 2L | 20339582..20339694 | 1243..1355 | 565 | 100 | Plus |
| 2L | 23513712 | 2L | 20334620..20334730 | 800..910 | 555 | 100 | Plus |
| 2L | 23513712 | 2L | 20336466..20336550 | 1028..1112 | 425 | 100 | Plus |
| 2L | 23513712 | 2L | 20343598..20343673 | 1487..1562 | 380 | 100 | Plus |
| 2L | 23513712 | 2L | 20322008..20322080 | 610..682 | 365 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 04:30:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2764..2847 | 578..662 | 134 | 63.5 | Plus |
BO30823.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-11 12:37:11 Download gff for
BO30823.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| spir-RD | 602..2356 | 17..1773 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:18:33 Download gff for
BO30823.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| spir-RD | 602..2356 | 17..1773 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:30:22 Download gff for
BO30823.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| spir-RD | 602..2356 | 17..1773 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:30:22 Download gff for
BO30823.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 20339582..20339693 | 1243..1354 | 100 | -> | Plus |
| 2L | 20339980..20340112 | 1355..1487 | 100 | -> | Plus |
| 2L | 20343599..20343672 | 1488..1561 | 100 | -> | Plus |
| 2L | 20343743..20343950 | 1562..1773 | 98 | | Plus |
| 2L | 20311820..20312414 | 17..611 | 100 | -> | Plus |
| 2L | 20322010..20322080 | 612..682 | 100 | -> | Plus |
| 2L | 20334081..20334198 | 683..800 | 100 | -> | Plus |
| 2L | 20334621..20334730 | 801..910 | 100 | -> | Plus |
| 2L | 20336287..20336404 | 911..1028 | 100 | -> | Plus |
| 2L | 20336467..20336549 | 1029..1111 | 100 | -> | Plus |
| 2L | 20339245..20339375 | 1112..1242 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:18:33 Download gff for
BO30823.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 20311820..20312414 | 17..611 | 100 | -> | Plus |
| arm_2L | 20322010..20322080 | 612..682 | 100 | -> | Plus |
| arm_2L | 20334081..20334198 | 683..800 | 100 | -> | Plus |
| arm_2L | 20334621..20334730 | 801..910 | 100 | -> | Plus |
| arm_2L | 20336287..20336404 | 911..1028 | 100 | -> | Plus |
| arm_2L | 20336467..20336549 | 1029..1111 | 100 | -> | Plus |
| arm_2L | 20339245..20339375 | 1112..1242 | 100 | -> | Plus |
| arm_2L | 20339582..20339693 | 1243..1354 | 100 | -> | Plus |
| arm_2L | 20339980..20340112 | 1355..1487 | 100 | -> | Plus |
| arm_2L | 20343599..20343672 | 1488..1561 | 100 | -> | Plus |
| arm_2L | 20343743..20343950 | 1562..1773 | 98 | | Plus |
BO30823.pep Sequence
Translation from 16 to 1789
> BO30823.pep
MTEHQAEEQADTPPTKVKATPTPTPSGKFKDAKEDAFLSTSPDSANGDAQ
HKLPADQLAMSSSAHPQQAGQARPLILQAFHRCSSPEQCVTLHDILDSFK
APLSEDQAWALIHQFAGLYHQVAVQAHTCAADYEAALPTGFELHFHRDGS
VHFSGPDQLTPKEQLQQEQIPLPPQHDVIVDQPDHSASSSGDSSVINRAF
DNSNHHHHHQHHHPPLVVSHRKIISELAEIVYTALDYNLPEDEECQVSQE
LENLFNFMTADETDDDCIDEGIDEGDKRWDDESEEERNDTKELEHIIETC
RNHIKTTLPENHYRAVCRALVTETIELRVFLQQVLNNAGAEKLIKASESS
ATTQQELAKLGFNDWARFWVQVIDELRRGVRLKKSNHERTPIEYELTPYE
ILMGDIRAKKYQLRKVMVNGDIPPRVKKDAHAMILEFIRSRPPLKKASDR
QLGPPRMCEPSPREQLMESIRKGKELKQITPPEAPTLRERVLPSANSTLS
RSRQRLIKVDFSKFQDDDLFYDENSISSSHSTAATHQHHPHFAEMHRCSQ
PKMPPYPFGGYMVPSQARQDCRETASLMRPRRTSIASFLDH
BO30823.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:16:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| spir-PD | 585 | CG10076-PD | 1..585 | 1..585 | 3101 | 100 | Plus |
| spir-PE | 990 | CG10076-PE | 1..584 | 1..584 | 3094 | 99.8 | Plus |
| spir-PG | 586 | CG10076-PG | 1..586 | 1..585 | 3089 | 99.8 | Plus |
| spir-PJ | 586 | CG10076-PJ | 1..586 | 1..585 | 3089 | 99.8 | Plus |
| spir-PB | 991 | CG10076-PB | 1..585 | 1..584 | 3082 | 99.7 | Plus |
