Clone BO30879 Report

Search the DGRC for BO30879

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:308
Well:79
Vector:pDNR-Dual
Associated Gene/TranscriptCG14424-RA
Protein status:BO30879.pep: Imported from assembly
Sequenced Size:823

Clone Sequence Records

BO30879.complete Sequence

823 bp assembled on 2012-03-05

GenBank Submission: KX798219

> BO30879.complete
GAAGTTATCAGTCGACATGGCAATTAAGTTGGTAGCCCTTTTGACCATCG
GACTGGCAATCTTTGCCGCGTGCGAAGCCCGCCATGTGAGCGGACACCAT
CGCAGGCAGCATTTTGAGCAGCGTGCCCTCATAGCGAAGCCCCACAGTGG
TCCCCAGGGACGAGTCTTCCCCGGTGCCGTGGCCATTAAGAAGCTGGTTC
TGCTTAAGTTCAAGAAGATCGTGCCCATCTCTCTGATCCTGCTGAAGTCA
AGCAACGAGAACGAGGCCGAGCTGGTGCCCGTCTATCCCACCGATCAGAT
TCCCGAGAACGTTCAGTTCATCCCGACACCCAATGGAATTTCCGGTCACA
AGGATGTCCAGGCCATCGCCATTCCTGCCGAGCTGCACGACCAGCTGCAG
ATCAACGGTCTGTCCAACCTGGAGAACATCGAGGCTCTGCTGCAGAGCAG
CTCGATCTCGGCTGCCGACAATGAAGGCGAGGCCCCCGTGGGCAACAGCA
TTGCCGTAGCCCAGCCCGAGGATGTGGTACTGGAGCAGCCAGAGAACGAT
GAGGATCAGCTGTTAGACGGAGCCGCTCCAGTCGCCGCTCCTGTAGCCGT
CGCTCCCGCCGCCCTGCGCCGCCTATCCGCCGACGAGCTGCTCCGCTCCG
GCGTGCGCAACTCTGCCCAGCAGCAGCAGACCAGCGTGGAGGAGATACCC
CTGCTTCTGTACTCCGCCAACGAGGGCTCCTCCTCCGCCGGAAACTCGGG
ACGTCGCTTTGTGGCCGCCGCTCCGGCACAGCGCCGTCGCCAGCAGTTCT
ACAACGCAAGCTTTCTAGACCAT

BO30879.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:24:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG14424-RA 792 CG14424-PA 1..789 17..805 3945 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:24:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG14424-RA 1046 CG14424-RA 90..878 17..805 3945 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:24:36
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2926052..2926781 805..76 3650 100 Minus
X 23542271 X 2927109..2927169 77..17 305 100 Minus
Blast to na_te.dros performed on 2014-11-28 08:24:37 has no hits.

BO30879.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-05 16:16:17 Download gff for BO30879.complete
Subject Subject Range Query Range Percent Splice Strand
CG14424-RA 1..789 17..807 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:34:23 Download gff for BO30879.complete
Subject Subject Range Query Range Percent Splice Strand
CG14424-RA 90..878 17..807 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:17:32 Download gff for BO30879.complete
Subject Subject Range Query Range Percent Splice Strand
CG14424-RA 90..878 17..807 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:17:32 Download gff for BO30879.complete
Subject Subject Range Query Range Percent Splice Strand
X 2926050..2926779 78..807 99 <- Minus
X 2927109..2927169 17..77 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:34:23 Download gff for BO30879.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 2820083..2820812 78..807 99 <- Minus
arm_X 2821142..2821202 17..77 100   Minus

BO30879.pep Sequence

Translation from 16 to 823

> BO30879.pep
MAIKLVALLTIGLAIFAACEARHVSGHHRRQHFEQRALIAKPHSGPQGRV
FPGAVAIKKLVLLKFKKIVPISLILLKSSNENEAELVPVYPTDQIPENVQ
FIPTPNGISGHKDVQAIAIPAELHDQLQINGLSNLENIEALLQSSSISAA
DNEGEAPVGNSIAVAQPEDVVLEQPENDEDQLLDGAAPVAAPVAVAPAAL
RRLSADELLRSGVRNSAQQQQTSVEEIPLLLYSANEGSSSAGNSGRRFVA
AAPAQRRRQQFYNASFLDH

BO30879.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:48:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG14424-PA 263 CG14424-PA 1..263 1..263 1304 100 Plus