Clone BO30904 Report

Search the DGRC for BO30904

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:309
Well:4
Vector:pDNR-Dual
Associated Gene/TranscriptRph-RB
Protein status:BO30904.pep: Imported from assembly
Sequenced Size:1237

Clone Sequence Records

BO30904.complete Sequence

1237 bp assembled on 2012-03-19

GenBank Submission: KX798551

> BO30904.complete
GAAGTTATCAGTCGACATGGCCAAGGGCATTGCTTCCACTCGTTTGCAAC
GGGAGGATAGCTTCCGGCTGAGGGCATACGGCTCCATACGCAGCTTTATC
GACGGCGGCGAGCGGAAGTTGTCCAACTCCTTCTTCTTCAACCGCCAGCA
AAGTCAACGGCCATCGGAGTGCCCGGAATACGACAGCGTCAGCATGTCGA
AGCTGAGGCGGGAGAGCAGCTTCCTGCGGCGCGGCTCCGTCAGCTCCTCC
TGGTCGATTAGCGATAGTTCCGGCTCCGGATCGAACAACTCCGGCAACTC
ACAAACGCAGTCGCAGTACCAGCAGCACCAGCAACAGCTACAGCAGCACT
GTCGCGATCCCCTGCTCGGCTGGCTGGAGATTGCCATTAGCTATCGTGAG
GCCTTCCACAGCCTCGACTGCACCATGGTGCGTGCGCGGGATCTGCCCGC
CATGGATGCGGCCGGATTGGCGGACCCGTACTGCAAGCTCAACATCATTA
CGCCGGAGGCGCACACCAAGTACACGCGATGGCAGCGCACAAAGACGGTG
CACAAGACCCGCAATCCGGAGTTCAACGAAACGCTGCAGTTCGTCGGCGT
GGAGCCCGAGGAGCTGGGTAACTCGCTGATTTACGTGGCCCTTTTCGACG
ACGACAAGTACGGCCACGACTTTCTCGGCGCGGCCAAGGTCTGCCTTTCC
ACGGTGCACAGCACGTCGCAGTACCGGATTTCGGTGCCACTCGGCGTGGA
GGACCAGTACAGCAACGCGGCGGAGATGGCCCAGAACTGGCCCAATGGCA
AGATGCTTCTCTCGCTCTGCTACAACACCAAGCGAAGGGCGTTGGTGGTG
AATGTGAAACAGTGCATCAACCTGATGGCCATGGACAACAACGGCAGCTC
CGATCCCTTCGTCAAGATCCAACTCAAGCCGGATGCGCACAAGAACAAGA
AGCACAAGACCAGCGTCAAATGGCGCACGCTCAATCCCATCTACAACGAG
GAGTTCTACTTCGAGGCAAGTCCGCACGACCTCAACAAGGAGATGCTCAT
CCTGACCGTGTGGGACAAGGATCTCGGCAAGAGCAACGACTTCCTGGGCA
GCCTGCAATTGGGCGCCCAAAGCAAAGGCGAACGCCTGCAGCAGTGGCTC
GACTGCATCCGATTGCCCGATCACTTCCACGAGAAATGGCATTGCCTCGC
CCCCGACAATCCCGCCCACGCAAGCTTTCTAGACCAT

BO30904.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:04:25
Subject Length Description Subject Range Query Range Score Percent Strand
Rph-RA 1917 CG11556-PA 711..1914 16..1219 6020 100 Plus
Rph-RD 1206 CG11556-PD 1..1203 17..1219 6015 100 Plus
Rph-RB 1206 CG11556-PB 1..1203 17..1219 6015 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:04:26
Subject Length Description Subject Range Query Range Score Percent Strand
Rph-RD 3173 CG11556-RD 1253..2456 16..1219 6020 100 Plus
Rph-RB 3341 CG11556-RB 1421..2624 16..1219 6020 100 Plus
Rph-RA 2826 CG11556-RA 906..2109 16..1219 6020 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:04:23
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 10750923..10751613 706..16 3455 100 Minus
X 23542271 X 10749794..10750094 1219..919 1505 100 Minus
X 23542271 X 10750156..10750371 918..703 1080 100 Minus
Blast to na_te.dros performed 2014-11-28 04:04:24
Subject Length Description Subject Range Query Range Score Percent Strand
roo 9092 roo DM_ROO 9092bp 1058..1089 317..348 115 84.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2306..2338 316..348 111 81.8 Plus

BO30904.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-19 11:49:05 Download gff for BO30904.complete
Subject Subject Range Query Range Percent Splice Strand
Rph-RB 1422..2624 17..1221 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:08:52 Download gff for BO30904.complete
Subject Subject Range Query Range Percent Splice Strand
Rph-RA 907..2109 17..1221 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:18:50 Download gff for BO30904.complete
Subject Subject Range Query Range Percent Splice Strand
Rph-RA 907..2109 17..1221 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:18:50 Download gff for BO30904.complete
Subject Subject Range Query Range Percent Splice Strand
X 10749791..10750094 919..1221 99 <- Minus
X 10750156..10750370 704..918 100 <- Minus
X 10750926..10751612 17..703 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:08:52 Download gff for BO30904.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 10643824..10644127 919..1221 99 <- Minus
arm_X 10644189..10644403 704..918 100 <- Minus
arm_X 10644959..10645645 17..703 100   Minus

BO30904.pep Sequence

Translation from 16 to 1237

> BO30904.pep
MAKGIASTRLQREDSFRLRAYGSIRSFIDGGERKLSNSFFFNRQQSQRPS
ECPEYDSVSMSKLRRESSFLRRGSVSSSWSISDSSGSGSNNSGNSQTQSQ
YQQHQQQLQQHCRDPLLGWLEIAISYREAFHSLDCTMVRARDLPAMDAAG
LADPYCKLNIITPEAHTKYTRWQRTKTVHKTRNPEFNETLQFVGVEPEEL
GNSLIYVALFDDDKYGHDFLGAAKVCLSTVHSTSQYRISVPLGVEDQYSN
AAEMAQNWPNGKMLLSLCYNTKRRALVVNVKQCINLMAMDNNGSSDPFVK
IQLKPDAHKNKKHKTSVKWRTLNPIYNEEFYFEASPHDLNKEMLILTVWD
KDLGKSNDFLGSLQLGAQSKGERLQQWLDCIRLPDHFHEKWHCLAPDNPA
HASFLDH

BO30904.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:56:58
Subject Length Description Subject Range Query Range Score Percent Strand
Rph-PD 401 CG11556-PD 1..401 1..401 2139 100 Plus
Rph-PB 401 CG11556-PB 1..401 1..401 2139 100 Plus
Rph-PA 638 CG11556-PA 238..638 1..401 2139 100 Plus
Rph-PC 520 CG11556-PC 94..358 1..265 1204 88.7 Plus
Syt1-PE 472 CG3139-PE 193..458 117..394 354 33.3 Plus