BO30925.complete Sequence
3571 bp assembled on 2012-04-30
GenBank Submission: KX794251
> BO30925.complete
GAAGTTATCAGTCGACATGTTTGGCGGCGCGAAACCCAGCTTCGGAGCCA
CTCCGGCGGCCACCAGCTTTGGCGGATTCAGCGGCACCACAACAACCACT
CCGTTTGGCCAGTCGGCATTTGGCAAACCCGCCGCACCGGCCTTTGGAAA
CACCTCCACCTTTGCCGCCCAACCCGCGCAGCAGTCACTGTTCGGTGCGG
CAGCCACACCAGCTCAGCCCGCCGGAGGCTTATTCGGGGCAAACACGTCC
ACGGGATTTGGAAGCACTGCCACAGCTCAGCCCACGGCTTTTGGAGCCTT
CTCGCAGCCGCAACAGACCTCGAACATATTTGGATCCACCCAGACGGCGG
CAAGCACCTCCCTCTTTGGACAATCGACGCTACCCGCCTTTGGAGCCGCC
AAGCCGACTATGACGGCCTTTGGGCAAACAGCTGCTGCTCAGCCCACGGG
CTCTTTGTTTGGCCAACCGGCTGCCGCCACCAGTACAACAGGATTCGGAG
GCTTTGGGACGTCGGCGCCTACAACCACCAATGTTTTTGGCAGTGGCACC
GCCTCCGCCTTTGCCCAACCTCAGGCTACGGCCGTGGGAGCTTCCGGAGT
CAATACGGGCACGGCCGTGGCCAAGTACCAGCCAACCATTGGTACAGATA
CCCTGATGAAGAGCGGTCAGGCAAATAGTGTGAACACTAAGCAGCACTGC
ATCACGGCTATGAAGGAGTTCGAGGGCAAATCTCTGGAGGAGCTCCGCCT
GGAAGACTATATGTGCGGGCGCAAGGGTCCACAGGCTGGGAATGCTCCGG
GAGCTTTTGGATTTGGAGCTCAGGTTACTCAGCCCGCTCAGCCTGCAAGT
GGTGGCCTGTTTGGAAGCACTGCCCAACCAAGCACAGGTCTGTTTGGCCA
AACTGTGACCGAGAATAAGAGCATGTTTGGCACCACCGCTTTTGGCCAAC
AACCGGCGACTAACAATGCATTCGGAGCAGCAACCCAGCAAAACAACTTT
CTGCAAAAGCCCTTTGGAGCCACCACCACCACTCCGTTTGCCGCTCCCGC
AGCTGACGCTTCAAATCCATTTGGGGCGAAGCCTGCTTTTGGACAGGGAG
GAAGCCTCTTTGGTCAGGCACCTGCTACCAGTGCGGCTCCTGCTTTCGGA
CAGACTAACACAGGATTCGGAGGCTTTGGAACCACAGCCGGAGCAACGCA
ACAGTCAACTCTTTTTGGTGCCACACCAGCCGCCGATCCAAATAAATCAG
CCTTTGGGTTGGGAACGGCTGCATCAGCAGCCACGACAGGTTTTGGATTT
GGAGCTCCAGCAACAAGCACCGCCGGCGGAGGCCTTTTCGGAAACAAGCC
CGCCACTAGCTTTGCTGCTCCAACTTTCGGCGCAACCTCCACGGCTAGCA
CTCCGTTTTCAAATTTTGGCCTGAACACCAGTACAGCAGCAACGGGAGGA
GGCCTTTTTAACTCGGGATTGAACAAGCCAGCAACGTCCGGATTCGGAGG
TTTTGGAGCCACCAGCGCAGCACCACTTAATTTCAACGCAGGCAACACGG
GCGGATCACTTTTCGGAAATACAGCCAAGCCGGGAGGAGGTCTTTTTGGA
GGAGGTACTACAACCTTGGGTGGCACGGGTGCTGCCCCAACGGGAGGACT
GTTTGGAGGAGGAACTACCAGTTTCGGAGGTGTCGGTGGTTCCTTGGGCG
GAGGAGGCTTCGGTATGGGTACAAACAACTCGTTAACTGGTGGTATTATG
GGAGCTCAGCCCACACTGGGTATCATGACGCCTTCACACCAGCCCATTCA
TCAGCAGATCCTAGCTAGGGTAACTTCTCCCTACGGAGACTCTCCGATTT
TCAAGGATCTAAAGCTAAGCAGTGAAGCAGATGCAACAAGAGCTACAAAT
CCTGCTGCCCAACAAGCAGTTCTGGACCTGACCAGCAACCAGTACAAGAT
AAGTACCAGCAACAATCCTGCTCCAATGAAGGTAAAGGCGCTGGGCAGCA
CACTTAATAGAAAATCGCTGTTTGATGGTCTCGAGGAGTTTGATGCTTCT
GTAGAGGGCTTCAATCTGAAGCCCAGTGCTAAACGATTAGTTATCAAACC
CAAAGTAAAAAGTGTAGAGGGTGGAAATCCCTCTAGCTCTATTGGCAGTG
CTCCCAACACGCCCCAATCTCGACCCAAAGGCGCAACTCCCAACAAAGAA
CGCGAGTCGTTTAGCGGAGCCATTCCAAGTGAGCCGCTACCACCAGCTGG
AAACTCGCCTGGAGCAACGAATGGACGGGAAAGTCAGGATAACGGCCGCC
GTGAGTCATGGCTGCATCCTAACAACCTTGAGAAGGTACGCCAGCACAAC
ATTCAGACTGGAATGGATCAGGGATCGCCCCATAACAGCACCCTCAACGA
GCTTGTGCCACGTAAACCTTTAGATACATACCGACCATCCTCCACCGTTC
GCCTCTCGGTGTCAACCATCCCAGAGAATCCATTTGAGGATCAATCCAGC
ACCATTGCACGTCGCGAAACCTTCACTTCGCAGCAGGCCAATGAGAGTGT
GCTTTCGAACAGATCTAATGAGGCAGAGGACTCTGCAGCAAACCAATCCC
GCCTAGCCATTGAGGCAGCTGCTGCAGAGGCAGCAGACGACGAATCACAT
CCAACAGGCATTGTGCTGCGACGCGTGGGTTACTATACAATTCCATCGCT
AGACGACCTACGCTCCTATCTGGCCGAGGACGGATCCTGTGTGGTTCCGA
ACTTTACGGTGGGTCGGGAAGGATACGGCAATGTCTTCTTCGGCAAGGAA
ATGGATGTGGCTGGCCTGAACCTCGATGAGATTGTCCACTTTCGCAACAA
GGAGATTATCATTTATCCCGACGACGAAAACAAGCCGCCCATTGGTCAAG
GTCTAAACCGTGACGCCCAGGTCACTTTGGACCAAGTATGGCCGTTGGAC
AAGACCAAGCACGAAGCCATCAAGGACCCACAACGCTTGCTTGAGATGGA
CTGGGAGGGCAAGTTGCGCCGGGTGTGCGATAAAAACGATACGCGCTTTA
TAGAATACCGCCCGGAAACGGGTAGTTGGGTCTTCCGCGTCAAGCACTTT
TCTAAATATGGCCTGGGAGACAGCGACGAAGAGGACGAGTTGCCCACTGA
CCCGAAAAAAGCCAAAATTGCAACGCTTGAGGCTCAGCAGCGGGCAAACG
CAGAAAAGATGACGCTCAATTCGCTGCGCCAAGCGCAGAAGATTTCAGAA
GATGCAGCCCGTAACTTGGACCCAAAAGCCTTGGTCGCAGGTGTTGCCAG
CGGATTCAGGCCAATGGATGATACCGCCGAGTTCCTTTTAATGGACAAAA
CACAATTTTTCCAAGCTGGTGGCAACTCCGATTTCTCCATGTTTGATCCA
CCGCGTCAACGTCCAACGATTACCAGTCCCACAGCTGTTTTGGCTCAGGA
AATGGTAGGCAACGAGGCGCACAAAATGCAGCTAATGAAGTCATCCTTCT
TTGTGGAGGACAATGCTCCCGAGGACGAACCCATGGGTAGGTGGATAATC
TCTGCAAGCTTTCTAGACCAT
BO30925.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:30:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nup98-96-RC | 3540 | CG10198-PC | 1..3537 | 17..3553 | 17685 | 100 | Plus |
| Nup98-96-RD | 5883 | CG10198-PD | 1..3520 | 17..3536 | 17600 | 100 | Plus |
| Nup98-96-RA | 5883 | CG10198-PA | 1..3520 | 17..3536 | 17600 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:30:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nup98-96-RC | 3987 | CG10198-RC | 246..3782 | 17..3553 | 17685 | 100 | Plus |
| Nup98-96-RD | 6412 | CG10198-RD | 246..3765 | 17..3536 | 17600 | 100 | Plus |
| Nup98-96-RA | 6624 | CG10198-RA | 458..3977 | 17..3536 | 17600 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:30:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23778287..23780831 | 2834..290 | 12710 | 100 | Minus |
| 3R | 32079331 | 3R | 23777689..23778208 | 3353..2834 | 2600 | 100 | Minus |
| 3R | 32079331 | 3R | 23780885..23781164 | 296..17 | 1400 | 100 | Minus |
| 3R | 32079331 | 3R | 23777421..23777620 | 3553..3354 | 1000 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 12:30:16 has no hits.
BO30925.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-30 10:04:02 Download gff for
BO30925.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nup98-RC | 487..4017 | 23..3555 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:44:03 Download gff for
BO30925.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nup98-96-RC | 252..3782 | 23..3555 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:05:36 Download gff for
BO30925.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nup98-96-RC | 252..3782 | 23..3555 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 13:05:36 Download gff for
BO30925.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23780885..23781158 | 23..296 | 100 | | Minus |
| 3R | 23778287..23780824 | 297..2834 | 100 | <- | Minus |
| 3R | 23777418..23777620 | 3354..3555 | 99 | <- | Minus |
| 3R | 23777689..23778207 | 2835..3353 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:44:03 Download gff for
BO30925.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19604009..19606546 | 297..2834 | 100 | <- | Minus |
| arm_3R | 19606607..19606880 | 23..296 | 100 | | Minus |
| arm_3R | 19603140..19603342 | 3354..3555 | 99 | <- | Minus |
| arm_3R | 19603411..19603929 | 2835..3353 | 100 | <- | Minus |
BO30925.pep Sequence
Translation from 16 to 3571
> BO30925.pep
MFGGAKPSFGATPAATSFGGFSGTTTTTPFGQSAFGKPAAPAFGNTSTFA
AQPAQQSLFGAAATPAQPAGGLFGANTSTGFGSTATAQPTAFGAFSQPQQ
TSNIFGSTQTAASTSLFGQSTLPAFGAAKPTMTAFGQTAAAQPTGSLFGQ
PAAATSTTGFGGFGTSAPTTTNVFGSGTASAFAQPQATAVGASGVNTGTA
VAKYQPTIGTDTLMKSGQANSVNTKQHCITAMKEFEGKSLEELRLEDYMC
GRKGPQAGNAPGAFGFGAQVTQPAQPASGGLFGSTAQPSTGLFGQTVTEN
KSMFGTTAFGQQPATNNAFGAATQQNNFLQKPFGATTTTPFAAPAADASN
PFGAKPAFGQGGSLFGQAPATSAAPAFGQTNTGFGGFGTTAGATQQSTLF
GATPAADPNKSAFGLGTAASAATTGFGFGAPATSTAGGGLFGNKPATSFA
APTFGATSTASTPFSNFGLNTSTAATGGGLFNSGLNKPATSGFGGFGATS
AAPLNFNAGNTGGSLFGNTAKPGGGLFGGGTTTLGGTGAAPTGGLFGGGT
TSFGGVGGSLGGGGFGMGTNNSLTGGIMGAQPTLGIMTPSHQPIHQQILA
RVTSPYGDSPIFKDLKLSSEADATRATNPAAQQAVLDLTSNQYKISTSNN
PAPMKVKALGSTLNRKSLFDGLEEFDASVEGFNLKPSAKRLVIKPKVKSV
EGGNPSSSIGSAPNTPQSRPKGATPNKERESFSGAIPSEPLPPAGNSPGA
TNGRESQDNGRRESWLHPNNLEKVRQHNIQTGMDQGSPHNSTLNELVPRK
PLDTYRPSSTVRLSVSTIPENPFEDQSSTIARRETFTSQQANESVLSNRS
NEAEDSAANQSRLAIEAAAAEAADDESHPTGIVLRRVGYYTIPSLDDLRS
YLAEDGSCVVPNFTVGREGYGNVFFGKEMDVAGLNLDEIVHFRNKEIIIY
PDDENKPPIGQGLNRDAQVTLDQVWPLDKTKHEAIKDPQRLLEMDWEGKL
RRVCDKNDTRFIEYRPETGSWVFRVKHFSKYGLGDSDEEDELPTDPKKAK
IATLEAQQRANAEKMTLNSLRQAQKISEDAARNLDPKALVAGVASGFRPM
DDTAEFLLMDKTQFFQAGGNSDFSMFDPPRQRPTITSPTAVLAQEMVGNE
AHKMQLMKSSFFVEDNAPEDEPMGRWIISASFLDH
BO30925.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:25:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nup98-96-PC | 1179 | CG10198-PC | 1..1179 | 1..1179 | 6117 | 100 | Plus |
| Nup98-96-PD | 1960 | CG10198-PD | 1..1173 | 1..1173 | 6083 | 100 | Plus |
| Nup98-96-PA | 1960 | CG10198-PA | 1..1173 | 1..1173 | 6083 | 100 | Plus |
| CG14712-PA | 1266 | CG14712-PA | 573..1240 | 64..739 | 326 | 27 | Plus |
| CG14712-PA | 1266 | CG14712-PA | 649..1216 | 8..566 | 314 | 29 | Plus |
| Nup214-PA | 1711 | CG3820-PA | 1097..1624 | 2..585 | 289 | 27.7 | Plus |
