Clone BO30929 Report

Search the DGRC for BO30929

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:309
Well:29
Vector:pDNR-Dual
Associated Gene/TranscriptCG11073-RB
Protein status:BO30929.pep: Imported from assembly
Sequenced Size:1396

Clone Sequence Records

BO30929.complete Sequence

1396 bp assembled on 2012-03-19

GenBank Submission: KX798471

> BO30929.complete
GAAGTTATCAGTCGACATGCAGTTCGATCCGAAGACACGATGCGGTGGCA
GCGTGGTTAGCTTTACCGTTATGCTGCTGCTGATCATCGGCGCCGATTTC
GCCGCTGGAAGGCCTGATGTGCGCGAGTCGCCCTTCGCCCTCAATCTGCA
GCCTCCGCTGCTGCAGTCGGACGTGACCTTCAGTTCAGGCCAGGGGGGTG
GTGCCGGGCCGAAGGCCATCGACAGCTACGGCAACCCCATCGACGCCCTG
CGACCCATCGATACGCCCGACGGGCGCAAGGTGGTCAGCGCCCAGGGCGT
TCAGTTTGAGATACCCACATACGCCTCGGGAATCACGGAGATCCGGCGGC
CGGCCGATGATCTTCTGCCGCCACACATTGATAACACGCCGAAGGATTCG
AGCAGCAGTGGCAGCAGCAGCACCACAACTTTCGTCAACACCACTCCAAG
CCCGTTGGATGCTGGCAACCCATTCGATTCGGCCACCATTCCTGCCTGGC
TGCGTGACTTCGACTATCCGGATGTCGGACCGGGCGTGCCCTTTGACCCG
GACAACTTTGGAACAGCGTCGGCCAGCAGCACCCGTAACCCCACCAATCC
GCCACGTCCCCCCACCGTCCCGCCCGTTTCCTCCGCTTTTCCATCCAAAG
TCACGCTTCCGCTTCCAGGCAGCAGCATCAGTAGCAGTAGCAGTGAGGAA
CCACAGCTGGTACTCGTTCCGCCCGCTGACCGCGCGGAGGCCGCTTCTGG
TTCCGACTCCCAATTCGGCCCCAATCCTGGACAACTGACCCAACCCACTT
CCAACTCTGTCACGCCTTTTGCAGCCCGCTTCGAGCCATCGGCCAGCAGC
TCCAGCTCCCAGAGCGTTGAACCCTTCCCGCCCAGCAAGGTGGAGTACAC
CAAGAGCGACGAGGGCAAGGTCATCAGCACGCCGGTCACCAACAATCAGC
GAAAAACGGAGACTGTTGCACCTCCAGCTAGCAACACCGGGAAGTACACG
GGAGGATTTGGTGCACCGCCTGGCCTACTGCGCCCACAGTCAACCAATCC
CTCGGTCTCCAATTCGGGACCCAATTCCAATCCGAGACCCGGCTCCGACA
TCTATGTGGCTGGCAACCAACACGAGTTCAGCAGTGTTTTGAAGGCGAAC
AAGGCACGACCCACCGTGAATCCGGGTCGCTACAACGGCGGATTCGGGGC
GCCCACGGGAGTTCTTTCGCCTCAAGCGCAGGCGGAGCCACGTCCCTTCC
AGCCAATTAACCAGCGAACGGAACACAGGGAACAGTCATCCGGTGGCAAC
AGGAGGACTGAGAGCCGTTTTGGTGGACCGCCTGGCATTCTCGTGCCCTT
CGACAACGTGCAGCGAACTGGGGGGCAGGCAAGCTTTCTAGACCAT

BO30929.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:04:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG11073-RB 1365 CG11073-PB 1..1362 17..1378 6795 99.9 Plus
CG11073-RD 2427 CG11073-PD 1426..2424 380..1378 4980 99.9 Plus
CG11073-RC 2691 CG11073-PC 1690..2688 380..1378 4980 99.9 Plus
CG11073-RD 2427 CG11073-PD 1..103 17..119 515 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:04:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG11073-RB 1964 CG11073-RB 454..1815 17..1378 6795 99.9 Plus
CG11073-RD 3026 CG11073-RD 1879..2877 380..1378 4980 99.9 Plus
CG11073-RC 3290 CG11073-RC 2143..3141 380..1378 4980 99.9 Plus
CG11073-RD 3026 CG11073-RD 454..556 17..119 515 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:04:46
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22092142..22092718 956..380 2885 100 Minus
2R 25286936 2R 22091638..22092059 1378..957 2095 99.8 Minus
2R 25286936 2R 22094524..22094788 380..116 1325 100 Minus
2R 25286936 2R 22098982..22099081 116..17 500 100 Minus
Blast to na_te.dros performed on 2014-11-28 04:04:47 has no hits.

BO30929.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-19 11:49:11 Download gff for BO30929.complete
Subject Subject Range Query Range Percent Splice Strand
CG11073-RB 646..2007 17..1380 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:09:04 Download gff for BO30929.complete
Subject Subject Range Query Range Percent Splice Strand
CG11073-RB 454..1815 17..1380 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:19:03 Download gff for BO30929.complete
Subject Subject Range Query Range Percent Splice Strand
CG11073-RB 454..1815 17..1380 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:19:03 Download gff for BO30929.complete
Subject Subject Range Query Range Percent Splice Strand
2R 22091636..22092059 957..1380 99 <- Minus
2R 22092142..22092717 381..956 100 <- Minus
2R 22094524..22094787 117..380 100 <- Minus
2R 22098982..22099081 17..116 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:09:04 Download gff for BO30929.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17979141..17979564 957..1380 99 <- Minus
arm_2R 17979647..17980222 381..956 100 <- Minus
arm_2R 17982029..17982292 117..380 100 <- Minus
arm_2R 17986487..17986586 17..116 100   Minus

BO30929.pep Sequence

Translation from 16 to 1396

> BO30929.pep
MQFDPKTRCGGSVVSFTVMLLLIIGADFAAGRPDVRESPFALNLQPPLLQ
SDVTFSSGQGGGAGPKAIDSYGNPIDALRPIDTPDGRKVVSAQGVQFEIP
TYASGITEIRRPADDLLPPHIDNTPKDSSSSGSSSTTTFVNTTPSPLDAG
NPFDSATIPAWLRDFDYPDVGPGVPFDPDNFGTASASSTRNPTNPPRPPT
VPPVSSAFPSKVTLPLPGSSISSSSSEEPQLVLVPPADRAEAASGSDSQF
GPNPGQLTQPTSNSVTPFAARFEPSASSSSSQSVEPFPPSKVEYTKSDEG
KVISTPVTNNQRKTETVAPPASNTGKYTGGFGAPPGLLRPQSTNPSVSNS
GPNSNPRPGSDIYVAGNQHEFSSVLKANKARPTVNPGRYNGGFGAPTGVL
SPQAQAEPRPFQPINQRTEHREQSSGGNRRTESRFGGPPGILVPFDNVQR
TGGQASFLDH

BO30929.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:57:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG11073-PB 454 CG11073-PB 1..454 1..454 2385 100 Plus
CG11073-PD 808 CG11073-PD 474..808 120..454 1765 99.7 Plus
CG11073-PC 896 CG11073-PC 562..896 120..454 1765 99.7 Plus
CG11073-PA 1056 CG11073-PA 722..1056 120..454 1765 99.7 Plus
CG11073-PE 307 CG11073-PE 108..307 256..454 981 93.5 Plus
CG11073-PC 896 CG11073-PC 1..169 1..169 646 78.3 Plus
CG11073-PA 1056 CG11073-PA 1..137 1..137 636 89.8 Plus
CG11073-PD 808 CG11073-PD 1..509 1..447 198 24 Plus