Clone BO30938 Report

Search the DGRC for BO30938

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:309
Well:38
Vector:pDNR-Dual
Associated Gene/Transcriptflower-RB
Protein status:BO30938.pep: Imported from assembly
Sequenced Size:610

Clone Sequence Records

BO30938.complete Sequence

610 bp assembled on 2012-03-19

GenBank Submission: KX796442

> BO30938.complete
GAAGTTATCAGTCGACATGTCGTTTGCGGAAAAGATAACGGGTCTGCTGG
CACGGCCGAATCAACAAGATCCAATTGGACCGGAGCAGCCGTGGTATCTC
AAATATGGAAGTCGATTGCTGGGCATTGTGGCCGCCTTCTTTGCCATTCT
TTTCGGCCTGTGGAATGTGTTCTCCATCATCACGCTCAGCGTATCCTGCC
TGGTGGCTGGCATCCTTCAAATGGTGGCAGGATTTGTGGTGATGCTCTTG
GAGGCTCCCTGCTGTTTCGTCTGCTTTGGGCAGGTGAACGAGATCGCGGA
AAAGGTGGAATCTAAGCCCTTGTACTTCCGTGCCGGGCTCTACATTGCCA
TGGCCATTCCGCCCATTATTCTGTGCTTTGGACTGGCCAGCTTATTCGGC
AGTGGGCTGATCTTTGGCACTGGCGTGGTTTACGGCATGATGGCGTTAGG
CAAGAAAGCTTCTCGAGAGGACATGGCCGCCGCTGCCACATCGCCCACAC
AGATGGCCGGCAGTCAGGCGGGCGGTCAGATGCAGATGGGCGGCGATCAG
CATATCACACTCATGGAAGACCCCGATGTCTGGCGCCCCACAGCAAGCTT
TCTAGACCAT

BO30938.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:05:04
Subject Length Description Subject Range Query Range Score Percent Strand
fwe-RB 579 CG6151-PB 1..576 17..592 2880 100 Plus
fwe-RA 585 CG6151-PA 1..459 17..475 2220 98.9 Plus
fwe-RC 474 CG6151-PC 1..440 17..456 2200 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:05:06
Subject Length Description Subject Range Query Range Score Percent Strand
fwe-RB 3020 CG6151-RB 134..710 16..592 2885 100 Plus
fwe-RA 1342 CG6151-RA 134..593 16..475 2225 98.9 Plus
fwe-RC 2364 CG6151-RC 134..574 16..456 2205 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:05:03
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15813419..15813626 348..141 1040 100 Minus
3L 28110227 3L 15812762..15812897 592..457 680 100 Minus
3L 28110227 3L 15815936..15816057 140..19 610 100 Minus
3L 28110227 3L 15813246..15813353 456..349 540 100 Minus
Blast to na_te.dros performed on 2014-11-28 04:05:04 has no hits.

BO30938.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-19 11:49:14 Download gff for BO30938.complete
Subject Subject Range Query Range Percent Splice Strand
flower-RB 140..715 17..594 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:09:12 Download gff for BO30938.complete
Subject Subject Range Query Range Percent Splice Strand
fwe-RB 135..710 17..594 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:19:10 Download gff for BO30938.complete
Subject Subject Range Query Range Percent Splice Strand
fwe-RB 135..710 17..594 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:19:10 Download gff for BO30938.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15812760..15812897 457..594 98 <- Minus
3L 15813246..15813353 349..456 100 <- Minus
3L 15813419..15813626 141..348 100 <- Minus
3L 15815936..15816058 17..140 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:09:12 Download gff for BO30938.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15805860..15805997 457..594 98 <- Minus
arm_3L 15806346..15806453 349..456 100 <- Minus
arm_3L 15806519..15806726 141..348 100 <- Minus
arm_3L 15809036..15809158 17..140 99   Minus

BO30938.pep Sequence

Translation from 16 to 610

> BO30938.pep
MSFAEKITGLLARPNQQDPIGPEQPWYLKYGSRLLGIVAAFFAILFGLWN
VFSIITLSVSCLVAGILQMVAGFVVMLLEAPCCFVCFGQVNEIAEKVESK
PLYFRAGLYIAMAIPPIILCFGLASLFGSGLIFGTGVVYGMMALGKKASR
EDMAAAATSPTQMAGSQAGGQMQMGGDQHITLMEDPDVWRPTASFLDH

BO30938.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:57:38
Subject Length Description Subject Range Query Range Score Percent Strand
fwe-PB 192 CG6151-PB 1..192 1..192 995 100 Plus
fwe-PA 194 CG6151-PA 1..157 1..157 793 98.7 Plus
fwe-PC 157 CG6151-PC 1..146 1..146 754 100 Plus