BO30941.complete Sequence
580 bp assembled on 2012-03-19
GenBank Submission: KX797754
> BO30941.complete
GAAGTTATCAGTCGACATGCATGCCAGATTTGCGGATCCCGAGCCAGCGT
CTCCGGACAGCGTTGATGGAATCGAAACGGAGTCACTGGAGGCGCGGATT
GAGGCCTTCAAGCAAAATCCCCAGAACATGGCCGCGTTGCGGGAGGCGCT
CGACGATGTGCTCCTGCGGGCTGAGACGGAGGCGAACAGGCGGGCAGTTG
AGAGCCAGAAATCGCAACAGGGCAAGGAAAAACGACCGAGTTTCGCCATA
CCAGATTTTAAGAACGGCAAGGTGGTGAATCGCGCTCGAGGATTCGTGGT
GCGGATCTTCGATGCCATATGCAATTGCGCCAACAACAATGCGGCGGCGG
CCACGACGCGTTTCAAGCTGAGAAGCAACAGCGGCGGAGGGGGAGGCGGC
GGAGGTGGTGGTGGCGGAGCCAGCGGAAATGGCAAGCGTCAGCAGTCGCA
GAATGAGCCGGAAACCCTAGTCCTGACCAAGAAGAAGCCCGCCGGCGAAG
GCAAGAAAAAGAAGGGAGTCAGCATGGCCGATGACGTTCAAGCCGGCGTT
CGACTGATGGACGCAAGCTTTCTAGACCAT
BO30941.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:05:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9368-RA | 549 | CG9368-PA | 1..546 | 17..562 | 2730 | 100 | Plus |
| CG9368-RB | 534 | CG9368-PB | 1..531 | 17..562 | 2470 | 97.3 | Plus |
| CG9368-RD | 264 | CG9368-PD | 1..225 | 17..241 | 1125 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:05:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9368-RA | 1828 | CG9368-RA | 141..686 | 17..562 | 2730 | 100 | Plus |
| CG9368-RB | 1813 | CG9368-RB | 141..671 | 17..562 | 2470 | 97.3 | Plus |
| CG9368-RD | 2423 | CG9368-RD | 959..1281 | 240..562 | 1615 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:05:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19602656..19602978 | 240..562 | 1615 | 100 | Plus |
| 3L | 28110227 | 3L | 19601773..19601977 | 17..221 | 1025 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 04:05:12 has no hits.
BO30941.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-19 11:49:15 Download gff for
BO30941.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9368-RA | 119..664 | 17..564 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:09:17 Download gff for
BO30941.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9368-RA | 141..686 | 17..564 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:19:14 Download gff for
BO30941.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9368-RA | 141..686 | 17..564 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:19:14 Download gff for
BO30941.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19602656..19602978 | 240..564 | 99 | | Plus |
| 3L | 19601773..19601976 | 17..220 | 100 | -> | Plus |
| 3L | 19602042..19602060 | 221..239 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:09:17 Download gff for
BO30941.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19594873..19595076 | 17..220 | 100 | -> | Plus |
| arm_3L | 19595142..19595160 | 221..239 | 100 | -> | Plus |
| arm_3L | 19595756..19596078 | 240..564 | 99 | | Plus |
BO30941.pep Sequence
Translation from 16 to 580
> BO30941.pep
MHARFADPEPASPDSVDGIETESLEARIEAFKQNPQNMAALREALDDVLL
RAETEANRRAVESQKSQQGKEKRPSFAIPDFKNGKVVNRARGFVVRIFDA
ICNCANNNAAAATTRFKLRSNSGGGGGGGGGGGGASGNGKRQQSQNEPET
LVLTKKKPAGEGKKKKGVSMADDVQAGVRLMDASFLDH
BO30941.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:57:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9368-PA | 182 | CG9368-PA | 1..182 | 1..182 | 929 | 100 | Plus |
| CG9368-PB | 177 | CG9368-PB | 1..177 | 1..182 | 883 | 96.7 | Plus |
| CG9368-PD | 87 | CG9368-PD | 1..75 | 1..75 | 373 | 100 | Plus |
