Clone BO30942 Report

Search the DGRC for BO30942

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:309
Well:42
Vector:pDNR-Dual
Associated Gene/Transcripttsu-RA
Protein status:BO30942.pep: Imported from assembly
Sequenced Size:529

Clone Sequence Records

BO30942.complete Sequence

529 bp assembled on 2012-03-19

GenBank Submission: KX797922

> BO30942.complete
GAAGTTATCAGTCGACATGGCCGATGTGTTGGACATTGACAATGCGGAGG
AGTTCGAGGTGGACGAGGACGGTGACCAGGGCATTGTGCGCCTGAAGGAA
AAGGCGAAGCACCGCAAGGGACGCGGATTTGGAAGCGACAGTAACACCCG
AGAGGCGATCCACAGCTACGAGCGTGTGCGCAACGAGGACGACGATGAGC
TGGAACCTGGTCCACAAAGGTCCGTCGAGGGCTGGATACTGTTTGTCACC
TCTATCCATGAGGAGGCGCAGGAGGACGAGATTCAGGAAAAGTTCTGCGA
TTACGGAGAAATCAAGAACATTCACCTGAACCTCGACCGGCGTACTGGGT
TCTCAAAGGGATACGCTCTCGTCGAGTACGAGACCCACAAGCAGGCGCTC
GCCGCCAAAGAGGCCCTGAACGGTGCCGAAATAATGGGACAGACCATTCA
GGTTGACTGGTGCTTCGTTAAGGGACCGAAGCGCGTTAAAAAGTCCGAAA
AGCGTCGCAGAGCAAGCTTTCTAGACCAT

BO30942.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:05:16
Subject Length Description Subject Range Query Range Score Percent Strand
tsu-RA 498 CG8781-PA 1..495 17..511 2475 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:05:17
Subject Length Description Subject Range Query Range Score Percent Strand
tsu-RA 691 CG8781-RA 98..592 17..511 2475 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:05:15
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9111046..9111479 78..511 2170 100 Plus
2R 25286936 2R 9110896..9110956 17..77 305 100 Plus
Blast to na_te.dros performed on 2014-11-28 04:05:16 has no hits.

BO30942.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-19 11:49:16 Download gff for BO30942.complete
Subject Subject Range Query Range Percent Splice Strand
tsu-RA 96..590 17..513 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:09:19 Download gff for BO30942.complete
Subject Subject Range Query Range Percent Splice Strand
tsu-RA 98..592 17..513 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:19:15 Download gff for BO30942.complete
Subject Subject Range Query Range Percent Splice Strand
tsu-RA 98..592 17..513 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:19:15 Download gff for BO30942.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9110896..9110956 17..77 100 -> Plus
2R 9111046..9111479 78..513 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:09:19 Download gff for BO30942.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4998401..4998461 17..77 100 -> Plus
arm_2R 4998551..4998984 78..513 99   Plus

BO30942.pep Sequence

Translation from 16 to 529

> BO30942.pep
MADVLDIDNAEEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAIHS
YERVRNEDDDELEPGPQRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIK
NIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCF
VKGPKRVKKSEKRRRASFLDH

BO30942.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:57:50
Subject Length Description Subject Range Query Range Score Percent Strand
tsu-PA 165 CG8781-PA 1..165 1..165 866 100 Plus