Clone BO30946 Report

Search the DGRC for BO30946

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:309
Well:46
Vector:pDNR-Dual
Associated Gene/TranscriptDsp1-RD
Protein status:BO30946.pep: Imported from assembly
Sequenced Size:1192

Clone Sequence Records

BO30946.complete Sequence

1192 bp assembled on 2012-03-19

GenBank Submission: KX797994

> BO30946.complete
GAAGTTATCAGTCGACATGGAACACTTTCATCAAATACAGCAGCAATTGG
CTGCTCAGCAACAACAACAAGTACAACAGCAACAGTTGCAACAACACCAG
GTGGTCGTCCAGCAGAATCAGCAGCAGGCGCACCAGAACAGCTCCAATAC
CACAGCCGGCGTGGGCACCCAACAGCTGTTCACATACAAAATGGCCAGCA
GTTTTCCGAATCCGGCCACGACGATGGCCCAAGTGGTGGCCACATCGAAC
GCAGCCGGCACCACGGGCTATGATTATCGTCTAAATATGGCACAGGCAGC
CGCAGCAGCAGCCGTACCCGGCTCCCAGTGGTGGTATTCGGCCGCCAATC
AGGGACAGGTCGATGCCAATACAGCGGCGCAACTGCAGCACCAGCAGCAG
CAACAGCAACAGCAACAACAGCAGCAGCAGCAACAGCACCAGCAGCAACA
ACAGATGCAACAGCAGCAGCAGCAACAGAATGTCATCAATTCGGCGAGCC
CCATGAGCAGAGTCAAGGCCGATGCCAAGCCCAGAGGCCGAATGACCGCC
TACGCATACTTTGTACAAACTTGCAGAGAGGAGCACAAAAAGAAACATCC
CGATGAGACGGTGATATTCGCCGAATTCTCGCGGAAGTGCGCCGAACGGT
GGAAGACAATGGTGGACAAGGAGAAGAAGCGCTTCCACGAAATGGCCGAG
AAGGACAAGCAGCGATATGAGGCGGAAATGCAGAACTATGTGCCGCCCAA
GGGAGCGGTTGTGGGACGCGGCAAGAAGAGGAAACAGATCAAGGACCCCA
ATGCTCCAAAACGTTCATTGTCTGCGTTCTTCTGGTTCTGCAATGACGAG
AGAAATAAGGTGAAGGCACTTAATCCCGAGTTCGGAGTGGGCGACATCGC
CAAAGAGCTGGGACGAAAGTGGTCCGATGTGGATCCCGAGGTCAAGCAGA
AGTACGAGTCGATGGCCGAGCGGGACAAGGCTCGATATGAACGCGAGATG
ACCGAGTACAAGACGAGCGGGAAAATAGCCATGTCCGCACCGTCGATGCA
GGCGTCGATGCAGGCGCAGGCACAGAAAGCCGCGTTACTTGCCGCCGCTG
CCCAGCAGCAGCACCAGCAGCTGGAAGAGCAGCACGACGACGACGACGGC
GATGGAGATGATGACGAGAACCAAGCAAGCTTTCTAGACCAT

BO30946.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:04:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dsp1-RG 1161 CG12223-PG 1..1158 17..1174 5790 100 Plus
Dsp1-RD 1161 CG12223-PD 1..1158 17..1174 5790 100 Plus
Dsp1-RC 1158 CG12223-PC 1..1155 17..1174 5710 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:04:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dsp1-RG 2359 CG12223-RG 122..1279 17..1174 5790 100 Plus
Dsp1-RD 2903 CG12223-RD 779..1936 17..1174 5790 100 Plus
Dsp1-RC 4511 CG12223-RC 718..1872 17..1174 5710 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:04:54
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16336285..16336743 38..496 2295 100 Plus
X 23542271 X 16337625..16337804 995..1174 900 100 Plus
X 23542271 X 16337381..16337556 820..995 880 100 Plus
X 23542271 X 16337084..16337251 654..821 840 100 Plus
X 23542271 X 16336850..16337009 496..655 800 100 Plus
Blast to na_te.dros performed 2014-11-28 04:04:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2402..2854 19..480 333 56.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2358..2837 29..478 288 58.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6755..6831 1061..1137 123 65.4 Plus

BO30946.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-19 11:49:13 Download gff for BO30946.complete
Subject Subject Range Query Range Percent Splice Strand
Dsp1-RD 779..1936 17..1176 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:09:08 Download gff for BO30946.complete
Subject Subject Range Query Range Percent Splice Strand
Dsp1-RD 779..1936 17..1176 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:19:06 Download gff for BO30946.complete
Subject Subject Range Query Range Percent Splice Strand
Dsp1-RD 779..1936 17..1176 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:19:06 Download gff for BO30946.complete
Subject Subject Range Query Range Percent Splice Strand
X 16337625..16337804 995..1176 98   Plus
X 16334390..16334413 17..40 100 -> Plus
X 16336288..16336743 41..496 100 -> Plus
X 16336851..16337009 497..655 100 -> Plus
X 16337086..16337249 656..819 100 -> Plus
X 16337381..16337555 820..994 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:09:08 Download gff for BO30946.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 16228423..16228446 17..40 100 -> Plus
arm_X 16230321..16230776 41..496 100 -> Plus
arm_X 16230884..16231042 497..655 100 -> Plus
arm_X 16231119..16231282 656..819 100 -> Plus
arm_X 16231414..16231588 820..994 100 -> Plus
arm_X 16231658..16231837 995..1176 98   Plus

BO30946.pep Sequence

Translation from 16 to 1192

> BO30946.pep
MEHFHQIQQQLAAQQQQQVQQQQLQQHQVVVQQNQQQAHQNSSNTTAGVG
TQQLFTYKMASSFPNPATTMAQVVATSNAAGTTGYDYRLNMAQAAAAAAV
PGSQWWYSAANQGQVDANTAAQLQHQQQQQQQQQQQQQQQHQQQQQMQQQ
QQQQNVINSASPMSRVKADAKPRGRMTAYAYFVQTCREEHKKKHPDETVI
FAEFSRKCAERWKTMVDKEKKRFHEMAEKDKQRYEAEMQNYVPPKGAVVG
RGKKRKQIKDPNAPKRSLSAFFWFCNDERNKVKALNPEFGVGDIAKELGR
KWSDVDPEVKQKYESMAERDKARYEREMTEYKTSGKIAMSAPSMQASMQA
QAQKAALLAAAAQQQHQQLEEQHDDDDGDGDDDENQASFLDH

BO30946.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:57:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dsp1-PG 386 CG12223-PG 1..386 1..386 2010 100 Plus
Dsp1-PD 386 CG12223-PD 1..386 1..386 2010 100 Plus
Dsp1-PC 385 CG12223-PC 1..385 1..386 1993 99.7 Plus
Dsp1-PA 385 CG12223-PA 1..385 1..386 1993 99.7 Plus
Dsp1-PB 385 CG12223-PB 1..385 1..386 1993 99.7 Plus