Clone BO30947 Report

Search the DGRC for BO30947

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:309
Well:47
Vector:pDNR-Dual
Associated Gene/TranscriptCG42819-RA
Protein status:BO30947.pep: Imported from assembly
Sequenced Size:472

Clone Sequence Records

BO30947.complete Sequence

472 bp assembled on 2012-03-19

GenBank Submission: KX795082

> BO30947.complete
GAAGTTATCAGTCGACATGCGCAGCTACGTGAAGTCATCCTGTTCCTTGC
TGGTTCTGGTCCTGGCACTTGGAGCGGTTTCAGCTCAGCCAGCACGGCTG
GCAAAGCAACTTCAGAAACAGCAGGCAGCACCCTATCCATCCGCCGACGA
ACTGAAGCCGGAGGTGCCATTCGAGGAAGGAGTTCCGGATCAGACATATG
GACCACCGGATCTGACCTACGGCCCACCGCCTACCGATGCAGTTGAGCAG
CTACCCAGCGATGAGGAGCCGCAAGACTTTACACCCGATCCGGATGCAGA
GGAAGTTCAGCCTGTCCAGCAGGCACCCGCTCGCCTGACCAAGCAGATTA
GGAACGGTCCACGAGCTCAAGGACTGATTCTGCTCTCATCGAGTCCATTG
AGAGTGGCTAATTCCAATGGAATCCCATTCCCAGTGACCATTCAAGCCCT
GTGGGCAAGCTTTCTAGACCAT

BO30947.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:05:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG42819-RA 441 CG42819-PA 1..438 17..454 2190 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:05:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG42819-RA 604 CG42819-RA 63..500 17..454 2190 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:04:59
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8388832..8389269 454..17 2190 100 Minus
Blast to na_te.dros performed on 2014-11-28 04:05:00 has no hits.

BO30947.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-19 11:49:13 Download gff for BO30947.complete
Subject Subject Range Query Range Percent Splice Strand
CG42819-RA 36..473 17..456 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:09:10 Download gff for BO30947.complete
Subject Subject Range Query Range Percent Splice Strand
CG42819-RA 63..500 17..456 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:19:08 Download gff for BO30947.complete
Subject Subject Range Query Range Percent Splice Strand
CG42819-RA 63..500 17..456 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:19:08 Download gff for BO30947.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8388830..8389269 17..456 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:09:10 Download gff for BO30947.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8388830..8389269 17..456 99   Minus

BO30947.pep Sequence

Translation from 16 to 472

> BO30947.pep
MRSYVKSSCSLLVLVLALGAVSAQPARLAKQLQKQQAAPYPSADELKPEV
PFEEGVPDQTYGPPDLTYGPPPTDAVEQLPSDEEPQDFTPDPDAEEVQPV
QQAPARLTKQIRNGPRAQGLILLSSSPLRVANSNGIPFPVTIQALWASFL
DH

BO30947.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:57:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG42819-PA 146 CG42819-PA 1..146 1..146 754 100 Plus