BO30951.complete Sequence
2644 bp assembled on 2012-04-11
GenBank Submission: KX796682
> BO30951.complete
GAAGTTATCAGTCGACATGGCTACGCTACGGAACCACCTATCGGCGGGCG
GGGGGTTGAACCACAGCGGCCCGGACTCGCCACAGGAGCCGCAGGACGCG
GGCGCCACGCTGGCCATCGGCTATGTGCGGGAGTTCAGGATGCGCGTGGC
CTGCTTCCAGGTGCAGCGCTCCGAGGAATCGCTGGTGTACGTGCAGCGCA
GCGTTGCGCTGCTAGGCACCAAGGTGCTGCCGGCGCACTTTGCCCCCACG
CCAGGCAACCTGGAGCTGGCCCGCTTCTATGTGGATCTCTACGCGCTGAT
GGGCGCGCTGAAGAACGAGGGTGCCGAGGGCGATGTGCTGTGGGCCTGCG
TTGGACTGGTGCAGCACTGCTCACGGAATCTGGAGGCCCGCCAGGCGGTC
GTCGAGCATTTCTGCTTTGTGCCGCTGCTGGGAGTGCTCATAAGGCATAC
CAAACGAACGGAACGGGTGCACCGGCTGCTGGTGCTGCTGCAGGACCTTA
CATACGGCATAAAAATCGCCTGGGAGGAGCCCTTCCTGGCTGCGCTGATC
GAGCATCTGGTGGGGATCGTACTGTGTACGGAAGACGTCTCCTGCACTGC
GAGTGGTGGGTCCGTTCGCGACGACGACGACGAAAATACAATGCTCGCCC
TCTCCGTGCTGGTGAACCTTTGCTACAAGAACTTCGCCGTGCTGTTCCTC
TTTCTGCGCAGCGTCAACATATCCGCCTTTTGCCGGCGCATCCAGAACTA
CGGCCTGCTGGCGTACAAAATGCTAATCATCCTCTCGGAGGACGTCTACT
CCTTCCAGCAGTCCGAGCTGTGCACCTTCCTGCGCCTGTCGTTCGCCGGC
ATCGAGGACTGCCTGAAGCACTGGAACGTCGCCCAGCTGCGGCATATCGT
TGACTTCCTCTTGGACTCGCAGAGCCACCCCGGCCTGCATAGGGCGATGT
TGTCGCACGGCCATTTCTGTGAGGATTTCGAGAAGCTGCTGGACCAAATC
GACACTAGCAACGGCATGGACGTTTCGCAGGAGGAGACGAGCAAGCACCA
ACAAATTTCGCTCGGACTGGTCTTCCGCCTCGTCAGCTACATTCTGCAGA
TGTCCGAGGAAGCCAACAGCTGCATCAGCTTGGACGCCATCACGCCGCGC
TTGTATGAGATGGTCAGCGACTGGATGAGCTCCGATCAATGCGGCGCGGC
GGCTATTGAGCTGATCTGCACCCTGTTGCGCCTGGGCAAACGTGCGGCGG
TGGCCGAGATGATCGCCAACGATCCCTCTCACGTGGCCAAGTTGGTGGCC
AGCGCCGAGCGACCGGACACGGATGCCGGTCAAGTGTTAGCCACTCTGCG
CCTGCTGATCGCCCTGCTTCAGGAGACGAAGACCAATAAAGTGGTGCTGT
CCAAGATCTCCGAGTCGTACTTCGATAAGATCCTGGCTGCTCCGCTCGCC
CTCGTTCCCCAGTTTCTCAGCACACAGAGCCTGGCGCAGTGCGAGGTGGA
GAAAGCTTGCTTTTGCCTGCTGCTGCTCGTCAATGTCGCCGGCATCGCCA
AGAAGGCCTATCTGGACAAGTGCTGCACACTGCTGGAGCAGCCGCAGCTG
CAGTACTGCTTAGCCCGCGGTATGGTCAGCAAAAACGAGGCATTGGTGGC
TGCCGTTCTACAAATTGCTCAGTTCGAGCATTTTCCCAAGGCATCTGTAG
CAAAGCATGTGTCTGCTATCACCTCTAGTCCAGGTGGAATGATGACAAAG
GCTTCAGCTGTCGGCAGCGACCAGGTCGAGCAGTTGCGCAATCTAAGCTC
GATCTTCAAGGCCAATCGCATTTTCACCGACAAAGACATGGTCCAGCGGG
TTAACGCACTTCTGGACAACATCGGCGGCATTGTGAGCCGCAACGAACTG
GCATCGGCACCCACCTCGCAGGTGATCGAGCTGTACAACCACCGCATCGA
GAGCCTGAACGGCACCGTGGCGAGCCTTCAGCAGCGCCTGGAGCAGGCTG
GCGAGCAGCTGACTATTGGTACACAGCAGGCCCACGTGCAGAGCGCCGAG
CTCGAACGCTTTCAGTCTAGCAACTTCCAGCTGCTTATTAGCCAAGAACG
GCTGCAGACCCGGTGCAAGGATCTCAAACAGCAGAAGGTCGAACTGAAGA
GCAATATGACAATCCTGCTCAAGCAATTGTCCGAGAACTCCGTCCAATTG
CAGGCCAACGAACGGCGATTAACCGTGAAAAAGTCGGAGATTGCCGATCT
TCAAAAGGACTGCGAGAATCTGCGATCGAAACTGAGTGCCAAAAGCGAGG
AGCTCACTAAGCTGGAGGCTCACAACAAGGAGAACATCTCTCGTATCGAC
AAACTCAAGAAGTCCATGGCGGCCTACGAGCAGGACATGACGGAGAAGCT
GCGCACCATCGGTGAGCGGGATCGGGAGCTGGCCAAGACGCAAAAGGCTC
TCGAGGAGCAGCGGGAGGCCTGCAAGAAGTCCGAGGACCTGATTTCCGTG
CTGGAGACGCAGCTGCAGGAGCGCAAGGCTCAGATCGAGAGCCTCGAGAT
GGAACAGAAGGAGACGGAGGACTTGCGGAAGACGATCATGAGTCTGATGG
AGAGCAAAAAGCCGAAGCGGAAGGCTGCAAGCTTTCTAGACCAT
BO30951.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:49:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12702-RB | 2613 | CG12702-PB | 1..2610 | 17..2626 | 13050 | 100 | Plus |
| CG12702-RC | 2613 | CG12702-PC | 1..2610 | 17..2626 | 13050 | 100 | Plus |
| CG12702-RA | 2613 | CG12702-PA | 1..2610 | 17..2626 | 13050 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:49:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12702-RB | 3353 | CG12702-RB | 543..3152 | 17..2626 | 13050 | 100 | Plus |
| CG12702-RC | 3461 | CG12702-RC | 651..3260 | 17..2626 | 13050 | 100 | Plus |
| CG12702-RA | 2896 | CG12702-RA | 86..2695 | 17..2626 | 13050 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:49:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 19761256..19762233 | 994..17 | 4890 | 100 | Minus |
| X | 23542271 | X | 19760488..19761198 | 1705..995 | 3555 | 100 | Minus |
| X | 23542271 | X | 19760034..19760433 | 2101..1702 | 2000 | 100 | Minus |
| X | 23542271 | X | 19759374..19759664 | 2626..2336 | 1455 | 100 | Minus |
| X | 23542271 | X | 19759732..19759967 | 2335..2100 | 1180 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 04:49:15 has no hits.
BO30951.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-11 12:37:51 Download gff for
BO30951.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12702-RA | 91..2700 | 17..2628 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:20:25 Download gff for
BO30951.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12702-RA | 86..2695 | 17..2628 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:37:53 Download gff for
BO30951.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12702-RA | 86..2695 | 17..2628 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:37:53 Download gff for
BO30951.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 19759371..19759664 | 2336..2628 | 99 | <- | Minus |
| X | 19759732..19759966 | 2101..2335 | 100 | <- | Minus |
| X | 19760035..19760429 | 1706..2100 | 100 | <- | Minus |
| X | 19760488..19761198 | 995..1705 | 100 | <- | Minus |
| X | 19761256..19762233 | 17..994 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:20:25 Download gff for
BO30951.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 19653404..19653697 | 2336..2628 | 99 | <- | Minus |
| arm_X | 19653765..19653999 | 2101..2335 | 100 | <- | Minus |
| arm_X | 19654068..19654462 | 1706..2100 | 100 | <- | Minus |
| arm_X | 19654521..19655231 | 995..1705 | 100 | <- | Minus |
| arm_X | 19655289..19656266 | 17..994 | 100 | | Minus |
BO30951.pep Sequence
Translation from 16 to 2644
> BO30951.pep
MATLRNHLSAGGGLNHSGPDSPQEPQDAGATLAIGYVREFRMRVACFQVQ
RSEESLVYVQRSVALLGTKVLPAHFAPTPGNLELARFYVDLYALMGALKN
EGAEGDVLWACVGLVQHCSRNLEARQAVVEHFCFVPLLGVLIRHTKRTER
VHRLLVLLQDLTYGIKIAWEEPFLAALIEHLVGIVLCTEDVSCTASGGSV
RDDDDENTMLALSVLVNLCYKNFAVLFLFLRSVNISAFCRRIQNYGLLAY
KMLIILSEDVYSFQQSELCTFLRLSFAGIEDCLKHWNVAQLRHIVDFLLD
SQSHPGLHRAMLSHGHFCEDFEKLLDQIDTSNGMDVSQEETSKHQQISLG
LVFRLVSYILQMSEEANSCISLDAITPRLYEMVSDWMSSDQCGAAAIELI
CTLLRLGKRAAVAEMIANDPSHVAKLVASAERPDTDAGQVLATLRLLIAL
LQETKTNKVVLSKISESYFDKILAAPLALVPQFLSTQSLAQCEVEKACFC
LLLLVNVAGIAKKAYLDKCCTLLEQPQLQYCLARGMVSKNEALVAAVLQI
AQFEHFPKASVAKHVSAITSSPGGMMTKASAVGSDQVEQLRNLSSIFKAN
RIFTDKDMVQRVNALLDNIGGIVSRNELASAPTSQVIELYNHRIESLNGT
VASLQQRLEQAGEQLTIGTQQAHVQSAELERFQSSNFQLLISQERLQTRC
KDLKQQKVELKSNMTILLKQLSENSVQLQANERRLTVKKSEIADLQKDCE
NLRSKLSAKSEELTKLEAHNKENISRIDKLKKSMAAYEQDMTEKLRTIGE
RDRELAKTQKALEEQREACKKSEDLISVLETQLQERKAQIESLEMEQKET
EDLRKTIMSLMESKKPKRKAASFLDH
BO30951.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:21:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12702-PB | 870 | CG12702-PB | 1..870 | 1..870 | 4362 | 100 | Plus |
| CG12702-PC | 870 | CG12702-PC | 1..870 | 1..870 | 4362 | 100 | Plus |
| CG12702-PA | 870 | CG12702-PA | 1..870 | 1..870 | 4362 | 100 | Plus |
| Gmap-PC | 1208 | CG33206-PC | 517..742 | 635..864 | 191 | 23.6 | Plus |
| Gmap-PB | 1208 | CG33206-PB | 517..742 | 635..864 | 191 | 23.6 | Plus |
