BO30964.complete Sequence
1033 bp assembled on 2012-03-19
GenBank Submission: KX794217
> BO30964.complete
GAAGTTATCAGTCGACATGTCTGCGGCCACCAAATTACATAAAACAAGCT
GGTGCGCCCTGCGGCAGCTTCAACAATACAGAACTAAGGCCAACTTTAGT
GGCAGTTCTGCATCGTTAGCCAAGCGGAATGACCTGTTCAACCAGGAGCA
ACGCCGTCAACGGGATGCAGTGGGTCGAATCGATAAGATCGAGGTGCGGT
ATCTGGGACTTCCCGAGGATGTCACTCTGGTGATGAACGGCAACATCTCA
ACGCCCTTCAATTGCGCCCAGCATCTGAGTGAGGGGCACTGTAAGCGATC
GGCACTGGCCTTGATCGACGGCAGTGTTCCCTGGGATATGCACAGACCCT
TGCAGGAATCCTGTACTCTGCAGCTGCTTAACTTCCATGTTTCCGAGCCA
CATGTGGTCAACAAAGCATTCTGGCGCACTTGCAGCTTTATGTTGGGAGC
CGCCTTGAACCGCGCTTTCAAGCCGGAGGCCAATCTTCAGCTCCACAGCT
TTCCTGGACCCAATATCAAATCAGGTAGCTTCGTACACGACATTGTGCTC
CAAACCCAGAACTGGGAGCCAGGAAAAGAAGAGATGCGCGCCCTTTCGGC
AGAGATGGTTAAACTGGCTGCTCAGGATCTGCGCATCGAGCGTTTGGACG
TCCAACAGGATCTGGCCCAGGAGATGTTCAAGGATTCCAAGTATAAGAGC
GAACAGTTGCCCAGCATCTCGCAGCAGACCAATGGAAGGGTCACCTTGTA
TCGCCTGGGTGATCATATCGACATCTCACGCGGTCCAATGGTGGCGTCTA
CCAGCTTTTTGGGGAAATGCGTCATCTCGGCTGCCCACAAAGTTGCGGAG
GAGGGTCCCTCTGGTGCTTTCTATCGCATTCAGGGCGTTGCACTGCCGTC
TGGCTTCCAACTGAATCATGTTGCATTTGGTGTATTGGAGGAGCGTTCTA
AGAAACCTAGCCCCGCACGACTGCCCAATGAACCATTTGAGGAACAACAA
CAACTGCAATTATCTGCAAGCTTTCTAGACCAT
BO30964.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:06:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpL39-RA | 1002 | CG17166-PA | 1..999 | 17..1015 | 4980 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:06:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpL39-RA | 1137 | CG17166-RA | 57..1056 | 16..1015 | 4985 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:06:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 14998180..14998622 | 958..516 | 2215 | 100 | Minus |
| 3L | 28110227 | 3L | 14998961..14999286 | 414..89 | 1615 | 99.7 | Minus |
| 3L | 28110227 | 3L | 14998796..14998896 | 515..415 | 505 | 100 | Minus |
| 3L | 28110227 | 3L | 14999537..14999610 | 89..16 | 370 | 100 | Minus |
| 3L | 28110227 | 3L | 14998062..14998118 | 1015..959 | 285 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 04:06:00 has no hits.
BO30964.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-19 11:49:24 Download gff for
BO30964.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL39-RA | 56..1054 | 17..1017 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:09:41 Download gff for
BO30964.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL39-RA | 58..1056 | 17..1017 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:19:33 Download gff for
BO30964.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL39-RA | 58..1056 | 17..1017 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:19:33 Download gff for
BO30964.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 14998060..14998118 | 959..1017 | 96 | <- | Minus |
| 3L | 14998180..14998622 | 516..958 | 100 | <- | Minus |
| 3L | 14998796..14998896 | 415..515 | 100 | <- | Minus |
| 3L | 14998961..14999285 | 90..414 | 99 | <- | Minus |
| 3L | 14999537..14999609 | 17..89 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:09:41 Download gff for
BO30964.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 14991160..14991218 | 959..1017 | 96 | <- | Minus |
| arm_3L | 14991280..14991722 | 516..958 | 100 | <- | Minus |
| arm_3L | 14991896..14991996 | 415..515 | 100 | <- | Minus |
| arm_3L | 14992061..14992385 | 90..414 | 99 | <- | Minus |
| arm_3L | 14992637..14992709 | 17..89 | 100 | | Minus |
BO30964.pep Sequence
Translation from 16 to 1033
> BO30964.pep
MSAATKLHKTSWCALRQLQQYRTKANFSGSSASLAKRNDLFNQEQRRQRD
AVGRIDKIEVRYLGLPEDVTLVMNGNISTPFNCAQHLSEGHCKRSALALI
DGSVPWDMHRPLQESCTLQLLNFHVSEPHVVNKAFWRTCSFMLGAALNRA
FKPEANLQLHSFPGPNIKSGSFVHDIVLQTQNWEPGKEEMRALSAEMVKL
AAQDLRIERLDVQQDLAQEMFKDSKYKSEQLPSISQQTNGRVTLYRLGDH
IDISRGPMVASTSFLGKCVISAAHKVAEEGPSGAFYRIQGVALPSGFQLN
HVAFGVLEERSKKPSPARLPNEPFEEQQQLQLSASFLDH
BO30964.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:58:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpL39-PA | 333 | CG17166-PA | 1..333 | 1..333 | 1728 | 100 | Plus |
