BO30983.complete Sequence
1126 bp assembled on 2012-03-19
GenBank Submission: KX796461
> BO30983.complete
GAAGTTATCAGTCGACATGAACATCGTAAGCACTCAACTAGGGAATAGTT
TGTATAACTGCGTGCGATCTAATCTAAGATGGCCCTTGTGGACTCGATCA
CATTTTACCTACTATCCTACACGTATGGGAACTGGAAAACGAATGAATAT
GTTTAACGCCATTAATAACGCAATGGATTTGGCTCTAGACGAAAACAAAT
CCGCATTGTTGTTTGGCGAGGATGTGGGATTCGGTGGAGTTTTTCGGTGT
TCAGTAAATCTACGGGATAAGTACGGAAGTCAGCGTGTTTTTAATACCCC
CTTATGTGAGCAAGGAATCGCAGGCTTTGCAATAGGTGTGGCTAATACTG
GAGCAACCGCAATAGCAGAAATTCAGTTTGCGGACTATATATTTCCTAGT
TTTGACCAAATAGTTAATGAAGCTGCCAAATATCGATACCGAAGCGGAGG
GCTATTTGACTGTGGATCCTTAACTTTTAGAGTACCTTGCGGTGCTGTTG
GACACGGAGCACTCTACCATTCCCAAAGTCCGGAAGCATACTTTGCGCAT
ACACCGGGACTTCGTGTTGTGGTACCCCGTGGACCGATAAAAGCAAAAGG
CCTTATCCTTGCATGTATTCGTGATCCAAACCCTTGCATTGTTTTTGAGC
CAAAAACTTTATATCGAGCTGCCGTTGAGGAAGTTCCCGCGGAGTACTAT
ACATCACAGCTAGGCAAAGCTGATATATTGCGACATGGTAAAGACGTCAC
ACTTATTGGTTGGGGTACACAAGTCCATGTGCTATTAGAAGTAGCAGAAA
TTGCAAAATCAACGTTAAATATAGATTGTGAAGTTATAGACTTGGTCTCC
ATTTTGCCGTGGGACGCTATTACCATTTGCACCTCTGCTAAAAAAACCGG
ACGAGTTATAATTGCGCATGAAGCTCCATTAACACAAGGATTTGGATCAG
AACTAGCATCCTACATTCAAGAAAAGTGTTTTTTGCACCTTGAAGCACCC
GTTAAACGAGTGGCTGGTTGGGATACTCCGTTTCCCCATGTCTTCGAGCC
TTTTTATATGCCCGATAAACACCGATGTTTGTCAGCTATAAATGATATTG
TTAACTTTGCAAGCTTTCTAGACCAT
BO30983.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:06:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17691-RE | 1095 | CG17691-PE | 1..1092 | 17..1108 | 5460 | 100 | Plus |
| CG17691-RC | 1095 | CG17691-PC | 1..1092 | 17..1108 | 5460 | 100 | Plus |
| CG17691-RF | 321 | CG17691-PF | 1..308 | 17..324 | 1540 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:06:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17691-RE | 1221 | CG17691-RE | 85..1176 | 17..1108 | 5460 | 100 | Plus |
| CG17691-RC | 1244 | CG17691-RC | 108..1199 | 17..1108 | 5460 | 100 | Plus |
| CG17691-RF | 479 | CG17691-RF | 85..392 | 17..324 | 1540 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:06:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 1594945..1595195 | 324..574 | 1255 | 100 | Plus |
| 2R | 25286936 | 2R | 1590654..1590885 | 17..248 | 1160 | 100 | Plus |
| 2R | 25286936 | 2R | 1596188..1596412 | 884..1108 | 1125 | 100 | Plus |
| 2R | 25286936 | 2R | 1595765..1595987 | 571..793 | 1115 | 100 | Plus |
| 2R | 25286936 | 2R | 1596036..1596128 | 791..883 | 465 | 100 | Plus |
| 2R | 25286936 | 2R | 1590939..1591017 | 246..324 | 395 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 04:06:43 has no hits.
BO30983.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-19 11:49:33 Download gff for
BO30983.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17691-RE | 92..1183 | 17..1110 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:10:07 Download gff for
BO30983.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17691-RC | 108..1199 | 17..1110 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:19:55 Download gff for
BO30983.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17691-RC | 108..1199 | 17..1110 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:19:55 Download gff for
BO30983.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 1590654..1590883 | 17..246 | 100 | -> | Plus |
| 2R | 1590940..1591017 | 247..324 | 100 | -> | Plus |
| 2R | 1594946..1595192 | 325..571 | 100 | -> | Plus |
| 2R | 1595766..1595984 | 572..790 | 100 | -> | Plus |
| 2R | 1596036..1596128 | 791..883 | 100 | -> | Plus |
| 2R | 1596188..1596412 | 884..1110 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:10:07 Download gff for
BO30983.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ArmU | 1178971..1179200 | 17..246 | 100 | -> | Plus |
| ArmU | 1179257..1179334 | 247..324 | 100 | -> | Plus |
| ArmU | 1183263..1183509 | 325..571 | 100 | -> | Plus |
| ArmU | 1184083..1184301 | 572..790 | 100 | -> | Plus |
| ArmU | 1184353..1184445 | 791..883 | 100 | -> | Plus |
| ArmU | 1184505..1184729 | 884..1110 | 99 | | Plus |
BO30983.pep Sequence
Translation from 16 to 1126
> BO30983.pep
MNIVSTQLGNSLYNCVRSNLRWPLWTRSHFTYYPTRMGTGKRMNMFNAIN
NAMDLALDENKSALLFGEDVGFGGVFRCSVNLRDKYGSQRVFNTPLCEQG
IAGFAIGVANTGATAIAEIQFADYIFPSFDQIVNEAAKYRYRSGGLFDCG
SLTFRVPCGAVGHGALYHSQSPEAYFAHTPGLRVVVPRGPIKAKGLILAC
IRDPNPCIVFEPKTLYRAAVEEVPAEYYTSQLGKADILRHGKDVTLIGWG
TQVHVLLEVAEIAKSTLNIDCEVIDLVSILPWDAITICTSAKKTGRVIIA
HEAPLTQGFGSELASYIQEKCFLHLEAPVKRVAGWDTPFPHVFEPFYMPD
KHRCLSAINDIVNFASFLDH
BO30983.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:59:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17691-PE | 364 | CG17691-PE | 1..364 | 1..364 | 1940 | 100 | Plus |
| CG17691-PC | 364 | CG17691-PC | 1..364 | 1..364 | 1940 | 100 | Plus |
| CG17691-PF | 106 | CG17691-PF | 1..106 | 1..106 | 563 | 98.1 | Plus |
| CG11876-PD | 365 | CG11876-PD | 27..330 | 41..341 | 468 | 36.8 | Plus |
| CG11876-PA | 365 | CG11876-PA | 27..330 | 41..341 | 468 | 36.8 | Plus |
